Protein : Qrob_P0281740.2 Q. robur
Protein Identifier  ? Qrob_P0281740.2 Organism . Name  Quercus robur
Score  21.4 Score Type  egn
Protein Description  (M=2) K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 741  
Kegg Orthology  K16250
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103337417 2 740 + 739 Gaps:34 52.69 1452 67.84 0.0 DNA-directed RNA polymerase IV subunit 1
blastp_kegg lcl|tcc:TCM_016168 1 739 + 739 Gaps:30 51.82 1484 65.02 0.0 DNA-directed RNA polymerase II subunit RPB1-B putative
blastp_kegg lcl|vvi:100254724 13 740 + 728 Gaps:42 48.08 1560 66.93 0.0 DNA-directed RNA polymerase D subunit 1-like
blastp_kegg lcl|mdm:103422064 2 740 + 739 Gaps:36 59.29 1287 65.14 0.0 DNA-directed RNA polymerase IV subunit 1-like
blastp_kegg lcl|pxb:103966471 2 740 + 739 Gaps:36 52.05 1466 65.01 0.0 DNA-directed RNA polymerase IV subunit 1
blastp_kegg lcl|csv:101214578 17 740 + 724 Gaps:35 50.71 1469 62.95 0.0 DNA-directed RNA polymerase D subunit 1-like
blastp_kegg lcl|cmo:103490982 25 740 + 716 Gaps:33 49.63 1489 63.19 0.0 DNA-directed RNA polymerase IV subunit 1
blastp_kegg lcl|rcu:RCOM_1683300 2 737 + 736 Gaps:44 50.85 1475 65.87 0.0 DNA-directed RNA polymerase putative
blastp_kegg lcl|cic:CICLE_v10018489mg 2 737 + 736 Gaps:50 51.28 1443 64.86 0.0 hypothetical protein
blastp_kegg lcl|cit:102607057 2 737 + 736 Gaps:50 49.97 1481 64.73 0.0 DNA-directed RNA polymerase IV subunit 1-like
blastp_pdb 3h0g_M 5 583 + 579 Gaps:100 31.45 1752 28.68 4e-49 mol:protein length:1752 DNA-directed RNA polymerase II subunit rpb1
blastp_pdb 3h0g_A 5 583 + 579 Gaps:100 31.45 1752 28.68 4e-49 mol:protein length:1752 DNA-directed RNA polymerase II subunit rpb1
blastp_pdb 3s2h_A 5 583 + 579 Gaps:90 31.79 1733 29.76 1e-44 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s2d_A 5 583 + 579 Gaps:90 31.79 1733 29.76 1e-44 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s1r_A 5 583 + 579 Gaps:90 31.79 1733 29.76 1e-44 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s1q_A 5 583 + 579 Gaps:90 31.79 1733 29.76 1e-44 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s1n_A 5 583 + 579 Gaps:90 31.79 1733 29.76 1e-44 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s1m_A 5 583 + 579 Gaps:90 31.79 1733 29.76 1e-44 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s17_A 5 583 + 579 Gaps:90 31.79 1733 29.76 1e-44 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s16_A 5 583 + 579 Gaps:90 31.79 1733 29.76 1e-44 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_uniprot_sprot sp|Q9LQ02|NRPD1_ARATH 8 737 + 730 Gaps:51 51.00 1453 56.01 0.0 DNA-directed RNA polymerase IV subunit 1 OS Arabidopsis thaliana GN NRPD1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5D869|NRPE1_ARATH 33 706 + 674 Gaps:128 30.87 1976 32.13 8e-54 DNA-directed RNA polymerase V subunit 1 OS Arabidopsis thaliana GN NRPE1 PE 1 SV 1
blastp_uniprot_sprot sp|P35084|RPB1_DICDI 13 583 + 571 Gaps:99 32.54 1727 29.18 6e-50 DNA-directed RNA polymerase II subunit rpb1 OS Dictyostelium discoideum GN polr2a PE 2 SV 2
blastp_uniprot_sprot sp|P16356|RPB1_CAEEL 13 583 + 571 Gaps:108 30.55 1856 29.45 2e-49 DNA-directed RNA polymerase II subunit RPB1 OS Caenorhabditis elegans GN ama-1 PE 1 SV 3
blastp_uniprot_sprot sp|Q75A34|RPB1_ASHGO 5 583 + 579 Gaps:88 31.58 1745 30.31 4e-49 DNA-directed RNA polymerase II subunit RPB1 OS Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN RPB1 PE 3 SV 2
blastp_uniprot_sprot sp|P35074|RPB1_CAEBR 13 583 + 571 Gaps:108 30.60 1853 29.28 4e-49 DNA-directed RNA polymerase II subunit RPB1 OS Caenorhabditis briggsae GN rpb-1 PE 3 SV 2
blastp_uniprot_sprot sp|P04052|RPB1_DROME 5 583 + 579 Gaps:71 29.68 1887 29.82 9e-49 DNA-directed RNA polymerase II subunit RPB1 OS Drosophila melanogaster GN RpII215 PE 3 SV 4
blastp_uniprot_sprot sp|P36594|RPB1_SCHPO 5 583 + 579 Gaps:100 31.45 1752 28.68 1e-48 DNA-directed RNA polymerase II subunit rpb1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpb1 PE 1 SV 1
blastp_uniprot_sprot sp|P18616|NRPB1_ARATH 33 583 + 551 Gaps:98 29.42 1839 30.50 7e-48 DNA-directed RNA polymerase II subunit 1 OS Arabidopsis thaliana GN NRPB1 PE 1 SV 3
blastp_uniprot_sprot sp|P17546|RPB1A_TRYBB 37 583 + 547 Gaps:71 29.67 1766 29.58 9e-48 DNA-directed RNA polymerase II subunit RPB1-A OS Trypanosoma brucei brucei GN TRP4.8 PE 1 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 515 655 141 PTHR19376:SF35 none none none
SUPERFAMILY 30 385 356 SSF64484 none none none
SUPERFAMILY 513 627 115 SSF64484 none none none
SUPERFAMILY 416 470 55 SSF64484 none none none
Gene3D 128 199 72 G3DSA:2.40.40.20 none none none
Gene3D 46 71 26 G3DSA:2.40.40.20 none none none
Pfam 424 474 51 PF05000 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 4 IPR007083
PANTHER 30 498 469 PTHR19376 none none none
PANTHER 515 655 141 PTHR19376 none none none
Pfam 201 348 148 PF04983 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 3 IPR007066
SMART 1 226 226 SM00663 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase I subunit A N-terminus IPR006592
PANTHER 30 498 469 PTHR19376:SF35 none none none
Pfam 39 196 158 PF00623 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 2 IPR000722

0 Localization

0 Qtllist

0 Targeting