Protein : Qrob_P0280690.2 Q. robur
Protein Identifier  ? Qrob_P0280690.2 Organism . Name  Quercus robur
Score  83.1 Score Type  egn
Protein Description  (M=1) PTHR11937:SF13 - ACTIN-RELATED PROTEIN 6, ARP6 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 281  
Kegg Orthology  K11673
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006338 chromatin remodeling Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
GO:0031011 Ino80 complex A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10004596mg 2 280 + 279 Gaps:44 54.38 594 77.40 5e-179 hypothetical protein
blastp_kegg lcl|tcc:TCM_020838 2 280 + 279 Gaps:44 54.56 592 76.47 2e-178 Actin-related protein 9
blastp_kegg lcl|cit:102628953 2 280 + 279 Gaps:44 54.19 596 77.09 4e-178 actin-related protein 9-like
blastp_kegg lcl|pmum:103324128 2 280 + 279 Gaps:44 54.56 592 75.85 8e-175 actin-related protein 9
blastp_kegg lcl|pper:PRUPE_ppa003216mg 2 280 + 279 Gaps:44 54.56 592 75.23 1e-172 hypothetical protein
blastp_kegg lcl|vvi:100254451 2 280 + 279 Gaps:44 53.65 602 74.92 4e-172 actin-related protein 9-like
blastp_kegg lcl|rcu:RCOM_0491970 2 280 + 279 Gaps:45 54.67 589 74.53 8e-172 hypothetical protein
blastp_kegg lcl|pxb:103967489 2 280 + 279 Gaps:44 54.56 592 73.99 1e-169 actin-related protein 9
blastp_kegg lcl|pop:POPTR_0008s16490g 2 280 + 279 Gaps:44 54.65 591 72.45 3e-168 hypothetical protein
blastp_kegg lcl|gmx:100788484 2 280 + 279 Gaps:44 54.84 589 70.59 2e-161 actin-related protein 9-like
blastp_uniprot_sprot sp|Q9LSW2|ARP9_ARATH 2 279 + 278 Gaps:54 52.35 596 61.54 4e-129 Actin-related protein 9 OS Arabidopsis thaliana GN ARP9 PE 2 SV 1
blastp_uniprot_sprot sp|A2XQX0|ARP9_ORYSI 2 280 + 279 Gaps:52 53.75 586 60.00 1e-128 Actin-related protein 9 OS Oryza sativa subsp. indica GN ARP9 PE 3 SV 2
blastp_uniprot_sprot sp|Q0JF03|ARP9_ORYSJ 2 280 + 279 Gaps:52 53.75 586 60.00 1e-128 Actin-related protein 9 OS Oryza sativa subsp. japonica GN ARP9 PE 2 SV 1
blastp_uniprot_sprot sp|Q9US07|ARP8_SCHPO 1 251 + 251 Gaps:89 48.94 662 25.93 1e-13 Probable actin-related protein 8 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPAC664.02c PE 1 SV 2
blastp_uniprot_sprot sp|B5X2S3|ARP8_SALSA 2 262 + 261 Gaps:4 25.00 632 37.97 2e-10 Actin-related protein 8 OS Salmo salar GN actr8 PE 2 SV 1
blastp_uniprot_sprot sp|Q9VX09|ARP8_DROME 1 258 + 258 Gaps:7 26.52 607 36.02 5e-09 Actin-related protein 8 OS Drosophila melanogaster GN Arp8 PE 1 SV 1
blastp_uniprot_sprot sp|P59679|ARP8_DANRE 2 262 + 261 Gaps:6 25.68 623 38.12 5e-09 Actin-related protein 8 OS Danio rerio GN actr8 PE 2 SV 1
blastp_uniprot_sprot sp|D2I1E3|ARP8_AILME 2 262 + 261 Gaps:4 25.64 624 35.62 1e-08 Actin-related protein 8 OS Ailuropoda melanoleuca GN ACTR8 PE 3 SV 1
blastp_uniprot_sprot sp|Q9H981|ARP8_HUMAN 2 262 + 261 Gaps:4 25.64 624 35.00 1e-08 Actin-related protein 8 OS Homo sapiens GN ACTR8 PE 1 SV 2
blastp_uniprot_sprot sp|Q0IEG8|ARP8_AEDAE 1 48 + 48 none 8.54 562 54.17 2e-08 Actin-related protein 8 OS Aedes aegypti GN Arp8 PE 3 SV 1
rpsblast_cdd gnl|CDD|28896 2 258 + 257 Gaps:51 63.61 371 27.12 6e-24 cd00012 ACTIN Actin An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations but filaments form rapidly as salt concentration rises with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins..
rpsblast_kog gnl|CDD|36016 2 264 + 263 Gaps:110 57.12 618 35.41 3e-56 KOG0797 KOG0797 KOG0797 Actin-related protein [Cytoskeleton].
rpsblast_kog gnl|CDD|35899 154 264 + 111 Gaps:5 26.50 400 22.64 5e-07 KOG0680 KOG0680 KOG0680 Actin-related protein - Arp6p [Cytoskeleton].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 97 97 PTHR11937:SF13 none none IPR027668
PANTHER 157 258 102 PTHR11937:SF13 none none IPR027668
PANTHER 1 97 97 PTHR11937 none none IPR004000
Gene3D 157 236 80 G3DSA:3.30.420.40 none none none
Gene3D 5 50 46 G3DSA:3.30.420.40 none none none
PANTHER 157 258 102 PTHR11937 none none IPR004000
Pfam 5 50 46 PF00022 none Actin IPR004000
Pfam 151 256 106 PF00022 none Actin IPR004000
SUPERFAMILY 153 259 107 SSF53067 none none none
SUPERFAMILY 12 93 82 SSF53067 none none none

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting