Protein : Qrob_P0277270.2 Q. robur
Protein Identifier  ? Qrob_P0277270.2 Organism . Name  Quercus robur
Protein Description  (M=39) PF03330 - Rare lipoprotein A (RlpA)-like double-psi beta-barrel Alias (in v1)  Qrob_P0835400.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 149  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005576 extracellular region The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO:0009664 plant-type cell wall organization A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101302257 1 148 + 148 none 58.96 251 87.84 2e-92 expansin-A1-like
blastp_kegg lcl|pop:POPTR_0008s08790g 1 148 + 148 none 58.96 251 87.16 2e-91 POPTRDRAFT_656451 expansin 4 family protein
blastp_kegg lcl|cic:CICLE_v10032548mg 1 148 + 148 none 59.44 249 87.84 2e-91 hypothetical protein
blastp_kegg lcl|cit:102610917 1 148 + 148 none 59.44 249 87.84 2e-91 expansin-A1-like
blastp_kegg lcl|rcu:RCOM_0837240 1 148 + 148 none 59.44 249 89.19 4e-91 Alpha-expansin 1 precursor putative
blastp_kegg lcl|tcc:TCM_011686 1 148 + 148 Gaps:1 34.75 423 91.16 3e-90 Expansin A1 ALPHA 1.2 EXPA1
blastp_kegg lcl|pper:PRUPE_ppa010379mg 5 148 + 144 none 57.14 252 88.89 9e-90 hypothetical protein
blastp_kegg lcl|mdm:103425476 1 148 + 148 Gaps:2 59.29 253 86.67 2e-89 expansin-A1-like
blastp_kegg lcl|pmum:103321562 5 148 + 144 none 57.14 252 87.50 1e-88 expansin-A1
blastp_kegg lcl|pxb:103950807 4 148 + 145 Gaps:1 57.71 253 86.30 1e-88 EXP5 expansin-A1
blastp_pdb 2hcz_X 24 148 + 125 Gaps:26 49.39 245 35.54 3e-10 mol:protein length:245 Beta-expansin 1a
blastp_pdb 1n10_B 23 136 + 114 Gaps:15 42.74 241 36.89 9e-09 mol:protein length:241 Pollen allergen Phl p 1
blastp_pdb 1n10_A 23 136 + 114 Gaps:15 42.74 241 36.89 9e-09 mol:protein length:241 Pollen allergen Phl p 1
blastp_uniprot_sprot sp|Q9C554|EXPA1_ARATH 1 148 + 148 Gaps:1 59.60 250 81.88 2e-85 Expansin-A1 OS Arabidopsis thaliana GN EXPA1 PE 2 SV 1
blastp_uniprot_sprot sp|O80622|EXP15_ARATH 1 148 + 148 Gaps:1 58.10 253 82.31 1e-82 Expansin-A15 OS Arabidopsis thaliana GN EXPA15 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FMA0|EXP14_ARATH 1 148 + 148 Gaps:5 59.22 255 70.86 2e-72 Expansin-A14 OS Arabidopsis thaliana GN EXPA14 PE 2 SV 1
blastp_uniprot_sprot sp|O48818|EXPA4_ARATH 1 148 + 148 Gaps:3 57.98 257 71.81 4e-71 Expansin-A4 OS Arabidopsis thaliana GN EXPA4 PE 1 SV 1
blastp_uniprot_sprot sp|Q0DHB7|EXPA4_ORYSJ 1 148 + 148 Gaps:2 59.35 246 71.23 3e-70 Expansin-A4 OS Oryza sativa subsp. japonica GN EXPA4 PE 2 SV 1
blastp_uniprot_sprot sp|A2Y5R6|EXPA4_ORYSI 1 148 + 148 Gaps:2 59.35 246 71.23 3e-70 Expansin-A4 OS Oryza sativa subsp. indica GN EXPA4 PE 2 SV 1
blastp_uniprot_sprot sp|O80932|EXPA3_ARATH 1 148 + 148 Gaps:5 56.87 262 71.14 7e-70 Expansin-A3 OS Arabidopsis thaliana GN EXPA3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LDR9|EXP10_ARATH 9 148 + 140 Gaps:7 58.23 249 81.38 8e-70 Expansin-A10 OS Arabidopsis thaliana GN EXPA10 PE 2 SV 1
blastp_uniprot_sprot sp|Q6ZGU9|EXPA5_ORYSJ 23 148 + 126 Gaps:3 44.33 291 78.29 4e-69 Expansin-A5 OS Oryza sativa subsp. japonica GN EXPA5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LZ99|EXPA9_ARATH 21 148 + 128 Gaps:2 50.39 258 76.15 1e-68 Expansin-A9 OS Arabidopsis thaliana GN EXPA9 PE 2 SV 1
rpsblast_cdd gnl|CDD|165628 1 148 + 148 Gaps:1 59.51 247 80.27 1e-65 PLN00050 PLN00050 expansin A Provisional.
rpsblast_cdd gnl|CDD|177787 13 148 + 136 Gaps:3 54.30 256 66.19 7e-54 PLN00193 PLN00193 expansin-A Provisional.
rpsblast_cdd gnl|CDD|129070 61 146 + 86 Gaps:1 100.00 87 79.31 2e-40 smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
rpsblast_cdd gnl|CDD|202595 61 146 + 86 Gaps:17 100.00 77 48.05 4e-21 pfam03330 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
rpsblast_cdd gnl|CDD|178594 26 102 + 77 Gaps:2 30.36 247 38.67 7e-09 PLN03023 PLN03023 Expansin-like B1 Provisional.

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 11 148 138 SSF50685 none none IPR009009
PRINTS 25 40 16 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 65 83 19 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 43 61 19 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 139 148 10 PR01225 none Expansin/Lol pI family signature IPR007118
Phobius 1 1 1 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PANTHER 6 148 143 PTHR31867 none none none
Phobius 21 148 128 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 61 146 86 PF03330 none Rare lipoprotein A (RlpA)-like double-psi beta-barrel IPR009009
Phobius 14 20 7 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
SMART 61 146 86 SM00837 none Rare lipoprotein A (RlpA)-like double-psi beta-barrel IPR007112
Phobius 1 20 20 SIGNAL_PEPTIDE none Signal peptide region none
Gene3D 11 148 138 G3DSA:2.40.40.10 none none IPR014733
PANTHER 6 148 143 PTHR31867:SF6 none none none
PRINTS 131 144 14 PR01226 none Expansin signature IPR002963
PRINTS 83 94 12 PR01226 none Expansin signature IPR002963
PRINTS 95 105 11 PR01226 none Expansin signature IPR002963
PRINTS 114 131 18 PR01226 none Expansin signature IPR002963
PRINTS 56 70 15 PR01226 none Expansin signature IPR002963
Phobius 2 13 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
ProSiteProfiles 44 148 105 PS50842 none Expansin, family-45 endoglucanase-like domain profile. IPR007112

3 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 31 30
SignalP_GRAM_NEGATIVE 1 20 19
SignalP_EUK 1 20 19

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL8_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BXT7R_864 29.91 0 47,18 lod 7.0997 0.044
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 20   Secretory pathway 1 0.949 0.089 NON-PLANT 20