Protein : Qrob_P0275990.2 Q. robur
Protein Identifier  ? Qrob_P0275990.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) K14016 - ubiquitin fusion degradation protein 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 306  
Kegg Orthology  K14016
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0006511 ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102610628 2 303 + 302 Gaps:18 98.44 321 51.27 5e-99 ubiquitin fusion degradation protein 1 homolog
blastp_kegg lcl|cic:CICLE_v10028844mg 2 303 + 302 Gaps:18 98.44 321 50.95 1e-98 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0300270 1 303 + 303 Gaps:15 99.68 315 49.68 1e-98 ubiquitin fusion degradaton protein putative
blastp_kegg lcl|csv:101204569 2 303 + 302 Gaps:18 98.44 321 51.90 1e-97 ubiquitin fusion degradation protein 1 homolog
blastp_kegg lcl|mtr:MTR_8g105250 2 303 + 302 Gaps:17 98.44 320 50.16 1e-97 Ubiquitin fusion degradation protein
blastp_kegg lcl|fve:101304529 2 303 + 302 Gaps:20 98.45 323 50.94 2e-97 ubiquitin fusion degradation protein 1 homolog
blastp_kegg lcl|pop:POPTR_0001s24900g 1 303 + 303 Gaps:14 99.36 311 49.51 8e-97 POPTRDRAFT_843512 hypothetical protein
blastp_kegg lcl|sita:101752645 11 303 + 293 Gaps:19 96.27 322 51.29 8e-97 ubiquitin fusion degradation protein 1 homolog
blastp_kegg lcl|rcu:RCOM_1450720 2 303 + 302 Gaps:18 88.76 356 51.90 1e-96 ubiquitin fusion degradaton protein putative
blastp_kegg lcl|tcc:TCM_006775 2 303 + 302 Gaps:16 98.43 319 51.59 3e-96 Ubiquitin fusion degradation 1 isoform 1
blastp_pdb 2yuj_A 9 181 + 173 Gaps:4 93.16 190 48.02 2e-51 mol:protein length:190 Ubiquitin fusion degradation 1-like
blastp_pdb 1zc1_A 13 191 + 179 Gaps:7 89.42 208 43.55 3e-44 mol:protein length:208 Ubiquitin fusion degradation protein 1
blastp_uniprot_sprot sp|P70362|UFD1_MOUSE 9 228 + 220 Gaps:4 72.96 307 45.09 2e-60 Ubiquitin fusion degradation protein 1 homolog OS Mus musculus GN Ufd1l PE 1 SV 2
blastp_uniprot_sprot sp|Q9ES53|UFD1_RAT 9 228 + 220 Gaps:4 72.96 307 45.09 2e-60 Ubiquitin fusion degradation protein 1 homolog OS Rattus norvegicus GN Ufd1l PE 1 SV 1
blastp_uniprot_sprot sp|Q92890|UFD1_HUMAN 9 228 + 220 Gaps:4 72.96 307 44.20 5e-59 Ubiquitin fusion degradation protein 1 homolog OS Homo sapiens GN UFD1L PE 1 SV 3
blastp_uniprot_sprot sp|Q55BK0|UFD1_DICDI 6 186 + 181 Gaps:2 55.45 330 46.99 1e-55 Ubiquitin fusion degradation protein 1 homolog OS Dictyostelium discoideum GN ufd1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9VTF9|UFD1_DROME 13 233 + 221 Gaps:23 73.42 316 42.67 5e-51 Ubiquitin fusion degradation protein 1 homolog OS Drosophila melanogaster GN Ufd1-like PE 2 SV 1
blastp_uniprot_sprot sp|P53044|UFD1_YEAST 13 196 + 184 Gaps:11 54.02 361 43.08 2e-43 Ubiquitin fusion degradation protein 1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN UFD1 PE 1 SV 1
blastp_uniprot_sprot sp|O42915|UFD1_SCHPO 6 188 + 183 Gaps:6 55.26 342 42.86 3e-43 Ubiquitin fusion degradation protein 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN ufd1 PE 2 SV 4
blastp_uniprot_sprot sp|Q19584|UFD1_CAEEL 28 236 + 209 Gaps:13 64.91 342 37.39 7e-40 Ubiquitin fusion degradation protein 1 homolog OS Caenorhabditis elegans GN ufd-1 PE 3 SV 1
rpsblast_cdd gnl|CDD|190546 12 184 + 173 Gaps:3 100.00 176 56.25 4e-70 pfam03152 UFD1 Ubiquitin fusion degradation protein UFD1. Post-translational ubiquitin-protein conjugates are recognised for degradation by the ubiquitin fusion degradation (UFD) pathway. Several proteins involved in this pathway have been identified. This family includes UFD1 a 40kD protein that is essential for vegetative cell viability. The human UFD1 gene is expressed at high levels during embryogenesis especially in the eyes and in the inner ear primordia and is thought to be important in the determination of ectoderm-derived structures including neural crest cells. In addition this gene is deleted in the CATCH-22 (cardiac defects abnormal facies thymic hypoplasia cleft palate and hypocalcaemia with deletions on chromosome 22) syndrome. This clinical syndrome is associated with a variety of developmental defects all characterized by microdeletions on 22q11.2. Two such developmental defects are the DiGeorge syndrome OMIM:188400 and the velo-cardio- facial syndrome OMIM:145410. Several of the abnormalities associated with these conditions are thought to be due to defective neural crest cell differentiation.
rpsblast_cdd gnl|CDD|34741 6 190 + 185 Gaps:6 57.70 331 39.27 5e-42 COG5140 UFD1 Ubiquitin fusion-degradation protein [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|178635 32 211 + 180 Gaps:24 34.57 567 33.16 9e-22 PLN03086 PLN03086 PRLI-interacting factor K Provisional.
rpsblast_kog gnl|CDD|37027 13 303 + 291 Gaps:19 94.16 308 46.21 2e-69 KOG1816 KOG1816 KOG1816 Ubiquitin fusion-degradation protein [Posttranslational modification protein turnover chaperones].

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 13 184 172 PF03152 none Ubiquitin fusion degradation protein UFD1 IPR004854
PANTHER 12 303 292 PTHR12555 none none IPR004854

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL1_Delta.F Qrob_Chr11 11 v_AC14YL05_1355 s_2F1WOG_696 10.96 3,25 16,39 lod 25.0121 0.2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 21   Mitochondrion 5 0.068 0.484 NON-PLANT 21