Protein : Qrob_P0275150.2 Q. robur
Protein Identifier  ? Qrob_P0275150.2 Organism . Name  Quercus robur
Protein Description  (M=1) PTHR12300//PTHR12300:SF28 - HVA22-LIKE PROTEINS // SUBFAMILY NOT NAMED Alias (in v1)  Qrob_P0081570.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 140  
Kegg Orthology  K17279
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006950 response to stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
GO:0009737 response to abscisic acid Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103437518 1 139 + 139 Gaps:3 100.00 140 80.71 7e-76 HVA22-like protein e
blastp_kegg lcl|pxb:103936167 1 139 + 139 Gaps:3 100.00 140 77.86 1e-74 HVA22-like protein e
blastp_kegg lcl|pxb:103964028 1 139 + 139 Gaps:3 100.00 140 77.86 1e-74 HVA22-like protein e
blastp_kegg lcl|pper:PRUPE_ppa013097mg 1 139 + 139 Gaps:3 100.00 140 76.43 3e-73 hypothetical protein
blastp_kegg lcl|pxb:103949985 1 139 + 139 Gaps:8 100.00 145 74.48 3e-71 HVA22-like protein e
blastp_kegg lcl|pmum:103338096 1 139 + 139 Gaps:4 100.00 141 75.89 3e-71 HVA22-like protein e
blastp_kegg lcl|fve:101296856 1 139 + 139 Gaps:1 100.00 140 75.71 8e-71 protein HVA22-like
blastp_kegg lcl|mdm:103455002 1 139 + 139 Gaps:7 81.11 180 71.92 5e-69 HVA22-like protein e
blastp_kegg lcl|cic:CICLE_v10033011mg 1 139 + 139 Gaps:5 100.00 144 70.14 1e-67 hypothetical protein
blastp_kegg lcl|cit:102623410 1 139 + 139 Gaps:5 100.00 144 70.14 1e-67 HVA22-like protein e-like
blastp_uniprot_sprot sp|Q9S760|HA22D_ARATH 1 139 + 139 Gaps:6 98.52 135 63.91 2e-54 HVA22-like protein d OS Arabidopsis thaliana GN HVA22D PE 2 SV 1
blastp_uniprot_sprot sp|Q07764|HVA22_HORVU 1 106 + 106 none 81.54 130 69.81 6e-52 Protein HVA22 OS Hordeum vulgare GN HVA22 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FED2|HA22E_ARATH 1 115 + 115 none 99.14 116 64.35 8e-50 HVA22-like protein e OS Arabidopsis thaliana GN HVA22E PE 2 SV 1
blastp_uniprot_sprot sp|Q9S7V4|HA22A_ARATH 14 98 + 85 none 48.02 177 56.47 1e-28 HVA22-like protein a OS Arabidopsis thaliana GN HVA22A PE 2 SV 1
blastp_uniprot_sprot sp|Q682H0|HA22F_ARATH 1 115 + 115 none 72.78 158 46.09 2e-28 HVA22-like protein f OS Arabidopsis thaliana GN HVA22F PE 2 SV 1
blastp_uniprot_sprot sp|Q9SYX7|HA22B_ARATH 14 99 + 86 none 51.50 167 53.49 3e-25 HVA22-like protein b OS Arabidopsis thaliana GN HVA22B PE 2 SV 2
blastp_uniprot_sprot sp|Q9S784|HA22C_ARATH 17 137 + 121 Gaps:8 61.41 184 44.25 2e-24 HVA22-like protein c OS Arabidopsis thaliana GN HVA22C PE 2 SV 1
blastp_uniprot_sprot sp|Q9UU91|YOP1_SCHPO 24 132 + 109 Gaps:5 62.64 182 35.09 4e-16 Protein yop1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN yop1 PE 1 SV 1
blastp_uniprot_sprot sp|P0CN16|YOP1_CRYNJ 24 120 + 97 Gaps:1 47.57 206 36.73 1e-15 Protein YOP1 OS Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN YOP1 PE 3 SV 1
blastp_uniprot_sprot sp|P0CN17|YOP1_CRYNB 24 120 + 97 Gaps:1 47.57 206 36.73 1e-15 Protein YOP1 OS Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN YOP1 PE 3 SV 1
rpsblast_cdd gnl|CDD|190535 16 101 + 86 none 91.49 94 46.51 7e-26 pfam03134 TB2_DP1_HVA22 TB2/DP1 HVA22 family. This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in humans is deleted in severe forms of familial adenomatous polyposis an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1 the HVA22 abscisic acid-induced protein which is thought to be a regulatory protein.
rpsblast_cdd gnl|CDD|34657 18 104 + 87 none 46.77 186 28.74 6e-15 COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion].
rpsblast_kog gnl|CDD|36936 17 120 + 104 none 55.91 186 44.23 5e-26 KOG1725 KOG1725 KOG1725 Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|36937 18 109 + 92 Gaps:2 41.78 225 35.11 2e-15 KOG1726 KOG1726 KOG1726 HVA22/DP1 gene product-related proteins [Defense mechanisms].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 64 74 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 4 105 102 PTHR12300 none none IPR004345
Phobius 94 139 46 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 4 105 102 PTHR12300:SF28 none none IPR031117
Phobius 1 11 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 12 32 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 13 99 87 PF03134 none TB2/DP1, HVA22 family IPR004345
Phobius 44 63 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 33 43 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 75 93 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

3 Localization

Analysis Start End Length
TMHMM 43 60 17
TMHMM 75 97 22
TMHMM 10 32 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 31   Secretory pathway 2 0.951 0.023 NON-PLANT 31