Protein : Qrob_P0274750.2 Q. robur
Protein Identifier  ? Qrob_P0274750.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=11) PF04563 - RNA polymerase beta subunit Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 90  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:4025099 1 68 + 68 none 6.36 1070 79.41 9e-27 rpoB ViviCp013 RNA polymerase beta chain
blastp_kegg lcl|sly:3950478 3 68 + 66 none 6.17 1070 80.30 2e-26 rpoB LyesC2p077 RNA polymerase beta subunit
blastp_kegg lcl|sot:4099994 3 68 + 66 none 6.17 1070 80.30 2e-26 rpoB SotuCp013 RNA polymerase beta chain
blastp_kegg lcl|pper:PrpeC_p013 1 68 + 68 none 6.36 1070 79.41 2e-26 rpoB RNA polymerase beta subunit
blastp_kegg lcl|pmum:18668009 1 68 + 68 none 6.36 1070 79.41 2e-26 rpoB CP95_p075 RNA polymerase beta subunit
blastp_kegg lcl|cit:4271235 1 68 + 68 none 6.36 1070 77.94 3e-26 rpoB CisiCp013 RNA polymerase beta subunit
blastp_kegg lcl|mtr:MTR_5g005060 1 68 + 68 none 34.69 196 73.53 1e-25 DNA-directed RNA polymerase subunit beta
blastp_kegg lcl|mtr:MTR_053s1008 1 68 + 68 none 30.91 220 73.53 1e-25 DNA-directed RNA polymerase subunit beta
blastp_kegg lcl|tcc:ThcaC_p013 1 68 + 68 none 6.36 1070 76.47 1e-25 rpoB RNA polymerase beta subunit
blastp_kegg lcl|pop:Poptr_cp012 1 68 + 68 none 6.36 1070 77.94 2e-25 rpoB RNA polymerase beta subunit (EC:2.7.7.6)
blastp_uniprot_sprot sp|Q09G54|RPOB_PLAOC 1 68 + 68 none 6.36 1070 79.41 3e-28 DNA-directed RNA polymerase subunit beta OS Platanus occidentalis GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q0ZJ28|RPOB_VITVI 1 68 + 68 none 6.36 1070 79.41 3e-28 DNA-directed RNA polymerase subunit beta OS Vitis vinifera GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q68S14|RPOB_PANGI 1 68 + 68 none 6.35 1071 79.41 4e-28 DNA-directed RNA polymerase subunit beta OS Panax ginseng GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|A6MMJ9|RPOB_DIOEL 1 68 + 68 none 6.36 1070 77.94 5e-28 DNA-directed RNA polymerase subunit beta OS Dioscorea elephantipes GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q2MIA8|RPOB_SOLLC 3 68 + 66 none 6.17 1070 80.30 6e-28 DNA-directed RNA polymerase subunit beta OS Solanum lycopersicum GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q2MIJ5|RPOB_SOLBU 3 68 + 66 none 6.17 1070 80.30 6e-28 DNA-directed RNA polymerase subunit beta OS Solanum bulbocastanum GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q8S8X9|RPOB_ATRBE 3 68 + 66 none 6.17 1070 80.30 6e-28 DNA-directed RNA polymerase subunit beta OS Atropa belladonna GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q2VEI4|RPOB_SOLTU 3 68 + 66 none 6.17 1070 80.30 6e-28 DNA-directed RNA polymerase subunit beta OS Solanum tuberosum GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|P06271|RPOB_TOBAC 3 68 + 66 none 6.17 1070 80.30 7e-28 DNA-directed RNA polymerase subunit beta OS Nicotiana tabacum GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q3C1G7|RPOB_NICSY 3 68 + 66 none 6.17 1070 80.30 7e-28 DNA-directed RNA polymerase subunit beta OS Nicotiana sylvestris GN rpoB PE 3 SV 1
rpsblast_cdd gnl|CDD|176946 1 89 + 89 Gaps:2 8.13 1070 63.22 1e-28 CHL00001 rpoB RNA polymerase beta subunit.
rpsblast_cdd gnl|CDD|191028 6 63 + 58 none 14.72 394 34.48 6e-08 pfam04563 RNA_pol_Rpb2_1 RNA polymerase beta subunit. RNA polymerases catalyze the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the protrusion domain. The other lobe (pfam04561) is nested within this domain.
rpsblast_kog gnl|CDD|35435 6 68 + 63 Gaps:17 7.01 1141 18.75 1e-09 KOG0214 KOG0214 KOG0214 RNA polymerase II second largest subunit [Transcription].

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 4 74 71 G3DSA:3.90.1100.10 none none none
Pfam 6 64 59 PF04563 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase beta subunit IPR007644

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting