Protein : Qrob_P0274440.2 Q. robur
Protein Identifier  ? Qrob_P0274440.2 Organism . Name  Quercus robur
Score  98.0 Score Type  egn
Protein Description  (M=1) KOG0498//KOG0499//KOG0500 - K+-channel ERG and related proteins contain PAS/PAC sensor domain [Inorganic ion transport and metabolism Signal transduction mechanisms]. // Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism Signal transduction mechanisms]. // Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism Signal transduction mechanisms]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 748  
Kegg Orthology  K05391
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0006811 ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sly:101250084 31 718 + 688 Gaps:22 78.67 708 53.86 4e-130 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|sot:102583090 31 718 + 688 Gaps:22 78.67 708 53.68 2e-129 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|ath:AT5G53130 31 713 + 683 Gaps:20 77.23 716 53.71 3e-129 CNGC1 cyclic nucleotide-gated ion channel 1
blastp_kegg lcl|tcc:TCM_015364 31 731 + 701 Gaps:19 79.80 713 53.43 5e-129 Cyclic nucleotide gated channel 1 isoform 1
blastp_kegg lcl|sot:102602102 32 733 + 702 Gaps:25 81.07 708 52.26 3e-128 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|sly:101257475 32 731 + 700 Gaps:23 80.23 708 52.46 4e-128 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|eus:EUTSA_v10012801mg 31 713 + 683 Gaps:28 77.47 719 53.14 9e-128 hypothetical protein
blastp_kegg lcl|pxb:103928207 23 730 + 708 Gaps:40 79.19 740 52.56 9e-128 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|aly:ARALYDRAFT_918383 31 713 + 683 Gaps:20 77.23 716 52.98 2e-126 hypothetical protein
blastp_kegg lcl|brp:103852055 31 731 + 701 Gaps:21 80.17 711 52.28 5e-126 cyclic nucleotide-gated ion channel 1
blastp_pdb 1wgp_A 560 679 + 120 Gaps:9 88.32 137 42.98 6e-21 mol:protein length:137 Probable cyclic nucleotide-gated ion channel
blastp_uniprot_sprot sp|O65717|CNGC1_ARATH 31 713 + 683 Gaps:20 77.23 716 53.71 1e-130 Cyclic nucleotide-gated ion channel 1 OS Arabidopsis thaliana GN CNGC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SKD7|CNGC3_ARATH 29 736 + 708 Gaps:33 81.87 706 45.33 6e-96 Probable cyclic nucleotide-gated ion channel 3 OS Arabidopsis thaliana GN CNGC3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LNJ0|CNG10_ARATH 16 731 + 716 Gaps:30 83.12 711 43.65 4e-94 Probable cyclic nucleotide-gated ion channel 10 OS Arabidopsis thaliana GN CNGC10 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LD40|CNG13_ARATH 32 729 + 698 Gaps:29 82.04 696 43.96 6e-90 Putative cyclic nucleotide-gated ion channel 13 OS Arabidopsis thaliana GN CNGC13 PE 3 SV 2
blastp_uniprot_sprot sp|Q9M0A4|CNGC9_ARATH 31 729 + 699 Gaps:62 78.72 733 42.29 2e-87 Putative cyclic nucleotide-gated ion channel 9 OS Arabidopsis thaliana GN CNGC9 PE 1 SV 1
blastp_uniprot_sprot sp|O82226|CNGC6_ARATH 16 722 + 707 Gaps:45 77.78 747 41.31 5e-86 Probable cyclic nucleotide-gated ion channel 6 OS Arabidopsis thaliana GN CNGC6 PE 1 SV 2
blastp_uniprot_sprot sp|Q8RWS9|CNGC5_ARATH 31 713 + 683 Gaps:38 78.24 717 41.35 4e-80 Probable cyclic nucleotide-gated ion channel 5 OS Arabidopsis thaliana GN CNGC5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FXH6|CNGC8_ARATH 16 718 + 703 Gaps:57 76.63 753 42.29 8e-78 Putative cyclic nucleotide-gated ion channel 8 OS Arabidopsis thaliana GN CNGC8 PE 3 SV 2
blastp_uniprot_sprot sp|Q9S9N5|CNGC7_ARATH 31 718 + 688 Gaps:53 76.96 738 42.43 9e-78 Putative cyclic nucleotide-gated ion channel 7 OS Arabidopsis thaliana GN CNGC7 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SKD6|CNG11_ARATH 20 736 + 717 Gaps:38 94.69 621 39.80 8e-72 Cyclic nucleotide-gated ion channel 11 OS Arabidopsis thaliana GN CNGC11 PE 2 SV 2
rpsblast_cdd gnl|CDD|28920 566 680 + 115 Gaps:15 92.17 115 28.30 2e-08 cd00038 CAP_ED effector domain of the CAP family of transcription factors members include CAP (or cAMP receptor protein (CRP)) which binds cAMP FNR (fumarate and nitrate reduction) which uses an iron-sulfur cluster to sense oxygen) and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues the best studied is the prokaryotic catabolite gene activator CAP where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded antiparallel beta-barrel structure three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel CooA is a homodimeric transcription factor that belongs to CAP family cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain cAPK's are composed of two different subunits a catalytic chain and a regulatory chain which contains both copies of the domain cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section also found in vertebrate cyclic nucleotide-gated ion-channels.
rpsblast_kog gnl|CDD|35719 16 716 + 701 Gaps:103 71.66 727 38.39 9e-68 KOG0498 KOG0498 KOG0498 K+-channel ERG and related proteins contain PAS/PAC sensor domain [Inorganic ion transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|35721 85 632 + 548 Gaps:76 65.30 536 22.29 1e-09 KOG0500 KOG0500 KOG0500 Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|35720 432 677 + 246 Gaps:33 28.83 815 21.70 2e-07 KOG0499 KOG0499 KOG0499 Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism Signal transduction mechanisms].

32 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 565 635 71 PS50042 none cAMP/cGMP binding motif profile. IPR000595
SMART 565 692 128 SM00100 none Cyclic nucleotide-monophosphate binding domain IPR000595
SUPERFAMILY 498 687 190 SSF51206 none none IPR018490
Phobius 347 454 108 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 294 350 57 G3DSA:1.10.287.70 none none none
Gene3D 40 232 193 G3DSA:1.10.287.70 none none none
Phobius 229 323 95 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 157 167 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 294 350 57 SSF81324 none none none
SUPERFAMILY 35 233 199 SSF81324 none none none
Phobius 42 64 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 324 346 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 85 103 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 132 156 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 24 237 214 PTHR10217:SF465 none none none
PANTHER 413 732 320 PTHR10217:SF465 none none none
Gene3D 426 497 72 G3DSA:1.10.287.70 none none none
Phobius 455 477 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 478 747 270 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 90 349 260 PF00520 none Ion transport protein IPR005821
Pfam 425 480 56 PF00520 none Ion transport protein IPR005821
SUPERFAMILY 427 525 99 SSF81324 none none none
Gene3D 550 681 132 G3DSA:2.60.120.10 none none IPR014710
PANTHER 24 237 214 PTHR10217 none none none
PANTHER 413 732 320 PTHR10217 none none none
Pfam 587 680 94 PF00027 none Cyclic nucleotide-binding domain IPR000595
Phobius 168 188 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 208 228 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 104 131 28 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 41 41 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

5 Localization

Analysis Start End Length
TMHMM 132 154 22
TMHMM 208 230 22
TMHMM 46 68 22
TMHMM 324 346 22
TMHMM 455 477 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting