Protein : Qrob_P0272580.2 Q. robur
Protein Identifier  ? Qrob_P0272580.2 Organism . Name  Quercus robur
Score  78.4 Score Type  egn
Protein Description  (M=21) PTHR11206:SF87 - MATE EFFLUX FAMILY PROTEIN-RELATED (PTHR11206:SF87) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 397  
Kegg Orthology  K03327
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006855 drug transmembrane transport The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
GO:0015238 drug transmembrane transporter activity Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
GO:0015297 antiporter activity Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out).
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10008114mg 1 394 + 394 none 80.41 490 71.32 0.0 hypothetical protein
blastp_kegg lcl|cit:102628882 1 394 + 394 none 78.17 504 71.32 0.0 MATE efflux family protein 5-like
blastp_kegg lcl|gmx:100815319 1 387 + 387 none 79.14 489 71.32 0.0 MATE efflux family protein 5-like
blastp_kegg lcl|vvi:100257810 1 392 + 392 none 79.51 493 72.45 0.0 MATE efflux family protein 6-like
blastp_kegg lcl|pvu:PHAVU_004G152500g 1 396 + 396 Gaps:1 78.84 501 71.14 0.0 hypothetical protein
blastp_kegg lcl|vvi:100252666 1 394 + 394 none 80.24 491 72.34 0.0 MATE efflux family protein DTX1-like
blastp_kegg lcl|gmx:100792588 1 396 + 396 Gaps:1 79.32 498 70.13 0.0 MATE efflux family protein DTX1-like
blastp_kegg lcl|tcc:TCM_012552 1 394 + 394 none 79.28 497 70.30 0.0 MATE efflux family protein
blastp_kegg lcl|tcc:TCM_012553 1 394 + 394 none 79.28 497 69.80 0.0 MATE efflux family protein
blastp_kegg lcl|pper:PRUPE_ppa004805mg 1 394 + 394 none 80.24 491 69.29 0.0 hypothetical protein
blastp_pdb 3mku_B 4 382 + 379 Gaps:20 83.70 460 25.71 2e-25 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mku_A 4 382 + 379 Gaps:20 83.70 460 25.71 2e-25 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mkt_B 4 382 + 379 Gaps:20 83.70 460 25.71 2e-25 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mkt_A 4 382 + 379 Gaps:20 83.70 460 25.71 2e-25 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_uniprot_sprot sp|Q9SIA5|DTX1_ARATH 4 384 + 381 Gaps:2 80.04 476 46.98 3e-106 MATE efflux family protein DTX1 OS Arabidopsis thaliana GN DTX1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA3|MATE6_ARATH 4 387 + 384 none 80.67 476 45.31 2e-105 MATE efflux family protein 6 OS Arabidopsis thaliana GN DTXL2 PE 3 SV 2
blastp_uniprot_sprot sp|Q8GXM8|MATE7_ARATH 4 384 + 381 Gaps:2 80.04 476 44.36 1e-102 MATE efflux family protein 7 OS Arabidopsis thaliana GN DTXL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q8RWF5|MATE9_ARATH 1 384 + 384 Gaps:4 79.50 483 44.79 7e-102 MATE efflux family protein 9 OS Arabidopsis thaliana GN DTXL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA1|MATE8_ARATH 4 390 + 387 Gaps:4 81.13 477 44.96 7e-102 MATE efflux family protein 8 OS Arabidopsis thaliana GN DTXL4 PE 3 SV 2
blastp_uniprot_sprot sp|Q9SIA4|MATE5_ARATH 1 387 + 387 none 81.30 476 44.44 8e-100 MATE efflux family protein 5 OS Arabidopsis thaliana GN DTXL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LUH3|LAL5_ARATH 1 373 + 373 none 79.53 469 41.55 5e-92 MATE efflux family protein LAL5 OS Arabidopsis thaliana GN LAL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LUH2|ALF5_ARATH 1 375 + 375 none 78.62 477 40.80 1e-91 MATE efflux family protein ALF5 OS Arabidopsis thaliana GN ALF5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LYT3|TT12_ARATH 1 392 + 392 none 77.32 507 36.22 4e-79 Protein TRANSPARENT TESTA 12 OS Arabidopsis thaliana GN TT12 PE 2 SV 1
blastp_uniprot_sprot sp|Q3V050|S47A2_MOUSE 1 383 + 383 Gaps:2 66.49 573 33.60 1e-63 Multidrug and toxin extrusion protein 2 OS Mus musculus GN Slc47a2 PE 1 SV 1
rpsblast_cdd gnl|CDD|162043 1 294 + 294 Gaps:5 86.26 342 28.14 3e-48 TIGR00797 matE putative efflux protein MATE family. The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus a putative ethionine resistance protein of Saccharomyces cerevisiae and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
rpsblast_cdd gnl|CDD|30880 1 383 + 383 Gaps:7 84.40 455 25.52 3e-35 COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms].
rpsblast_cdd gnl|CDD|179333 4 383 + 380 Gaps:22 84.21 456 22.92 1e-24 PRK01766 PRK01766 multidrug efflux protein Reviewed.
rpsblast_cdd gnl|CDD|166843 26 364 + 339 Gaps:29 75.00 464 24.14 6e-14 PRK00187 PRK00187 multidrug efflux protein NorA Provisional.
rpsblast_cdd gnl|CDD|190033 1 333 + 333 Gaps:4 100.00 161 40.37 1e-13 pfam01554 MatE MatE. The MatE domain.
rpsblast_kog gnl|CDD|36561 1 384 + 384 Gaps:2 80.76 473 44.24 6e-98 KOG1347 KOG1347 KOG1347 Uncharacterized membrane protein predicted efflux pump [General function prediction only].

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 1 113 113 PF01554 "Reactome:REACT_15518","Reactome:REACT_20633" MatE IPR002528
Pfam 174 336 163 PF01554 "Reactome:REACT_15518","Reactome:REACT_20633" MatE IPR002528
Phobius 127 146 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 26 26 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 187 205 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 288 306 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 318 342 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 116 126 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 348 369 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 394 394 PTHR11206:SF87 none none none
PANTHER 1 394 394 PTHR11206 none none none
Phobius 63 80 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 245 268 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 27 51 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 147 166 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 343 347 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 52 62 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 370 396 27 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
TIGRFAM 1 350 350 TIGR00797 "Reactome:REACT_15518","Reactome:REACT_20633" matE: MATE efflux family protein IPR002528
Phobius 269 287 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 225 244 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 307 317 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 81 91 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 206 224 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 92 115 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 167 186 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

10 Localization

Analysis Start End Length
TMHMM 320 342 22
TMHMM 27 49 22
TMHMM 168 190 22
TMHMM 125 147 22
TMHMM 205 227 22
TMHMM 286 308 22
TMHMM 64 86 22
TMHMM 93 115 22
TMHMM 348 367 19
TMHMM 249 271 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting