Protein : Qrob_P0272020.2 Q. robur
Protein Identifier  ? Qrob_P0272020.2 Organism . Name  Quercus robur
Score  11.0 Score Type  egn
Protein Description  (M=1) K18328 - lariat debranching enzyme [EC:3.1.-.-] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 410  
Kegg Orthology  K18328
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016787 hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO:0006397 mRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO:0016788 hydrolase activity, acting on ester bonds Catalysis of the hydrolysis of any ester bond.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100264324 1 386 + 386 none 93.01 415 79.02 0.0 lariat debranching enzyme-like
blastp_kegg lcl|csv:101207822 1 370 + 370 none 89.59 413 79.19 0.0 lariat debranching enzyme-like
blastp_kegg lcl|csv:101229820 1 370 + 370 none 89.59 413 79.19 0.0 lariat debranching enzyme-like
blastp_kegg lcl|tcc:TCM_036886 1 395 + 395 Gaps:3 94.69 414 76.53 0.0 Debranching enzyme 1 isoform 1
blastp_kegg lcl|cmo:103488361 1 370 + 370 none 89.59 413 79.19 0.0 lariat debranching enzyme
blastp_kegg lcl|cit:102627004 1 391 + 391 none 54.76 714 76.47 0.0 lariat debranching enzyme-like
blastp_kegg lcl|gmx:100812726 1 388 + 388 none 91.73 423 73.71 0.0 lariat debranching enzyme-like
blastp_kegg lcl|pper:PRUPE_ppa020250mg 1 388 + 388 none 91.94 422 74.74 0.0 hypothetical protein
blastp_kegg lcl|pmum:103320699 1 388 + 388 none 91.94 422 74.74 0.0 lariat debranching enzyme
blastp_kegg lcl|rcu:RCOM_0920340 1 390 + 390 none 51.32 760 75.13 0.0 RNA lariat debranching enzyme putative (EC:1.11.1.7)
blastp_uniprot_sprot sp|Q94K01|DBR1_ARATH 1 383 + 383 Gaps:2 91.15 418 73.75 0.0 Lariat debranching enzyme OS Arabidopsis thaliana GN DBR1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6AU07|DBR1_ORYSJ 1 357 + 357 none 87.71 407 69.47 0.0 Lariat debranching enzyme OS Oryza sativa subsp. japonica GN DBR1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6P886|DBR1_XENTR 1 379 + 379 Gaps:26 73.97 534 49.62 7e-131 Lariat debranching enzyme OS Xenopus tropicalis GN dbr1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6GPB8|DBR1A_XENLA 1 363 + 363 Gaps:20 70.22 534 51.47 5e-130 Lariat debranching enzyme A OS Xenopus laevis GN dbr1-a PE 2 SV 1
blastp_uniprot_sprot sp|Q9UK59|DBR1_HUMAN 1 361 + 361 Gaps:15 68.75 544 52.14 9e-129 Lariat debranching enzyme OS Homo sapiens GN DBR1 PE 1 SV 2
blastp_uniprot_sprot sp|Q923B1|DBR1_MOUSE 1 361 + 361 Gaps:15 68.00 550 51.07 1e-127 Lariat debranching enzyme OS Mus musculus GN Dbr1 PE 1 SV 2
blastp_uniprot_sprot sp|Q7T3E4|DBR1_DANRE 1 363 + 363 Gaps:20 66.02 568 51.73 3e-127 Lariat debranching enzyme OS Danio rerio GN dbr1 PE 1 SV 1
blastp_uniprot_sprot sp|Q7ZWU9|DBR1B_XENLA 1 363 + 363 Gaps:23 70.54 533 50.27 9e-126 Lariat debranching enzyme B OS Xenopus laevis GN dbr1-b PE 2 SV 1
blastp_uniprot_sprot sp|Q5ZLM2|DBR1_CHICK 1 375 + 375 Gaps:15 72.39 536 48.45 5e-124 Lariat debranching enzyme OS Gallus gallus GN DBR1 PE 2 SV 1
blastp_uniprot_sprot sp|Q29FE1|DBR1_DROPS 1 408 + 408 Gaps:64 84.54 537 45.59 1e-116 Lariat debranching enzyme OS Drosophila pseudoobscura pseudoobscura GN DBR1 PE 3 SV 2
rpsblast_cdd gnl|CDD|163619 3 259 + 257 Gaps:5 100.00 262 64.12 1e-135 cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse but all share a conserved domain with an active site consisting of two metal ions (usually manganese iron or zinc) coordinated with octahedral geometry by a cage of histidine aspartate and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases Dbr1-like RNA lariat debranching enzymes YfcE-like phosphodiesterases purple acid phosphatases (PAPs) YbbF-like UDP-2 3-diacylglucosamine hydrolases and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
rpsblast_cdd gnl|CDD|203150 235 367 + 133 Gaps:14 100.00 147 38.10 5e-33 pfam05011 DBR1 Lariat debranching enzyme C-terminal domain. This presumed domain is found at the C-terminus of lariat debranching enzyme. This domain is always found in association with pfam00149.
rpsblast_cdd gnl|CDD|201036 2 229 + 228 Gaps:44 99.46 185 27.72 3e-14 pfam00149 Metallophos Calcineurin-like phosphoesterase. This family includes a diverse range of phosphoesterases including protein phosphoserine phosphatases nucleotidases sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this superfamily centre around the metal chelating residues.
rpsblast_kog gnl|CDD|38074 1 376 + 376 Gaps:7 83.99 456 53.79 1e-140 KOG2863 KOG2863 KOG2863 RNA lariat debranching enzyme [RNA processing and modification].
rpsblast_kog gnl|CDD|37687 2 225 + 224 Gaps:40 35.61 528 28.19 6e-09 KOG2476 KOG2476 KOG2476 Uncharacterized conserved protein [Function unknown].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 1 229 229 PF00149 none Calcineurin-like phosphoesterase IPR004843
SUPERFAMILY 1 264 264 SSF56300 none none IPR029052
PANTHER 1 364 364 PTHR12849 none none none
Pfam 236 364 129 PF05011 none Lariat debranching enzyme, C-terminal domain IPR007708
Gene3D 1 229 229 G3DSA:3.60.21.10 none none IPR029052

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting