Protein : Qrob_P0270210.2 Q. robur
Protein Identifier  ? Qrob_P0270210.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K02982 - small subunit ribosomal protein S3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 321  
Kegg Orthology  K02982
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015935 small ribosomal subunit The smaller of the two subunits of a ribosome.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:4025021 111 319 + 209 Gaps:2 94.95 218 90.82 7e-129 rps3 ViviCp061 30S ribosomal protein S3
blastp_kegg lcl|pmum:18668070 111 319 + 209 Gaps:2 94.95 218 89.86 2e-128 rps3 CP95_p028 ribosomal protein S3
blastp_kegg lcl|pper:PrpeC_p060 111 319 + 209 Gaps:2 94.95 218 89.86 2e-128 rps3 ribosomal protein S3
blastp_kegg lcl|fve:10251559 111 319 + 209 Gaps:2 94.95 218 89.37 6e-128 rps3 FvH4_C0081 ribosomal protein S3
blastp_kegg lcl|tcc:ThcaC_p059 111 319 + 209 Gaps:2 94.95 218 87.92 6e-127 rps3 ribosomal protein S3
blastp_kegg lcl|ath:ArthCp061 111 319 + 209 Gaps:2 94.95 218 87.92 2e-126 rps3 30S ribosomal protein S3
blastp_kegg lcl|cit:4271190 111 319 + 209 Gaps:2 94.52 219 86.96 1e-125 rps3 CisiCp060 ribosomal protein S3
blastp_kegg lcl|rcu:RCOM_ORF00082 111 319 + 209 Gaps:2 94.95 218 85.99 5e-125 rps3 ribosomal protein S3
blastp_kegg lcl|sot:4099882 111 319 + 209 Gaps:2 94.95 218 85.51 7e-124 rps3 SotuCp061 30S ribosomal protein S3
blastp_kegg lcl|sly:3950406 111 319 + 209 Gaps:2 94.95 218 85.02 5e-123 rps3 LyesC2p031 ribosomal protein S3
blastp_pdb 3bbn_C 111 319 + 209 Gaps:2 94.95 218 82.61 2e-120 mol:protein length:218 Ribosomal Protein S3
blastp_pdb 4a2i_C 111 318 + 208 Gaps:13 94.66 206 41.03 2e-37 mol:protein length:206 30S RIBOSOMAL PROTEIN S3
blastp_pdb 3r8o_C 111 318 + 208 Gaps:13 94.66 206 41.03 2e-37 mol:protein length:206 30S ribosomal protein S3
blastp_pdb 3r8n_C 111 318 + 208 Gaps:13 94.66 206 41.03 2e-37 mol:protein length:206 30S ribosomal protein S3
blastp_pdb 3ofy_C 111 318 + 208 Gaps:13 94.66 206 41.03 2e-37 mol:protein length:206 30S ribosomal protein S3
blastp_pdb 3ofx_C 111 318 + 208 Gaps:13 94.66 206 41.03 2e-37 mol:protein length:206 30S ribosomal protein S3
blastp_pdb 3ofp_C 111 318 + 208 Gaps:13 94.66 206 41.03 2e-37 mol:protein length:206 30S ribosomal protein S3
blastp_pdb 3ofo_C 111 318 + 208 Gaps:13 94.66 206 41.03 2e-37 mol:protein length:206 30S ribosomal protein S3
blastp_pdb 3ofb_C 111 318 + 208 Gaps:13 94.66 206 41.03 2e-37 mol:protein length:206 30S ribosomal protein S3
blastp_pdb 3ofa_C 111 318 + 208 Gaps:13 94.66 206 41.03 2e-37 mol:protein length:206 30S ribosomal protein S3
blastp_uniprot_sprot sp|Q0ZIY0|RR3_VITVI 111 319 + 209 Gaps:2 94.95 218 90.82 2e-130 30S ribosomal protein S3 chloroplastic OS Vitis vinifera GN rps3 PE 3 SV 1
blastp_uniprot_sprot sp|A4QL57|RR3_DRANE 111 319 + 209 Gaps:2 94.95 218 88.89 7e-129 30S ribosomal protein S3 chloroplastic OS Draba nemorosa GN rps3 PE 3 SV 1
blastp_uniprot_sprot sp|A4QJW9|RR3_OLIPU 111 319 + 209 Gaps:2 94.95 218 87.92 7e-128 30S ribosomal protein S3 chloroplastic OS Olimarabidopsis pumila GN rps3 PE 3 SV 1
blastp_uniprot_sprot sp|A4QLX1|RR3_NASOF 111 319 + 209 Gaps:2 94.95 218 87.92 7e-128 30S ribosomal protein S3 chloroplastic OS Nasturtium officinale GN rps3 PE 3 SV 1
blastp_uniprot_sprot sp|A4QKN0|RR3_CAPBU 111 319 + 209 Gaps:2 94.95 218 87.92 7e-128 30S ribosomal protein S3 chloroplastic OS Capsella bursa-pastoris GN rps3 PE 3 SV 1
blastp_uniprot_sprot sp|P56798|RR3_ARATH 111 319 + 209 Gaps:2 94.95 218 87.92 7e-128 30S ribosomal protein S3 chloroplastic OS Arabidopsis thaliana GN rps3 PE 3 SV 1
blastp_uniprot_sprot sp|A4QJN7|RR3_AETGR 111 319 + 209 Gaps:2 94.95 218 87.92 9e-128 30S ribosomal protein S3 chloroplastic OS Aethionema grandiflorum GN rps3 PE 3 SV 1
blastp_uniprot_sprot sp|A4QJF3|RR3_AETCO 111 319 + 209 Gaps:2 94.95 218 87.92 9e-128 30S ribosomal protein S3 chloroplastic OS Aethionema cordifolium GN rps3 PE 3 SV 1
blastp_uniprot_sprot sp|A4QLN2|RR3_LOBMA 111 319 + 209 Gaps:2 94.95 218 87.92 1e-127 30S ribosomal protein S3 chloroplastic OS Lobularia maritima GN rps3 PE 3 SV 1
blastp_uniprot_sprot sp|A4QK56|RR3_ARAHI 111 319 + 209 Gaps:2 94.95 218 87.44 2e-127 30S ribosomal protein S3 chloroplastic OS Arabis hirsuta GN rps3 PE 3 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Hamap 100 319 220 MF_01309_B none 30S ribosomal protein S3 [rpsC]. IPR005704
SUPERFAMILY 109 213 105 SSF54814 none none IPR009019
TIGRFAM 108 319 212 TIGR01009 none rpsC_bact: ribosomal protein uS3 IPR005704
Pfam 2 76 75 PF00237 none Ribosomal protein L22p/L17e IPR001063
PANTHER 111 318 208 PTHR11760:SF19 none none none
Gene3D 117 218 102 G3DSA:3.30.300.20 none none IPR015946
ProSitePatterns 275 309 35 PS00548 none Ribosomal protein S3 signature. IPR018280
Gene3D 220 318 99 G3DSA:3.30.1140.32 none none IPR001351
SUPERFAMILY 12 72 61 SSF54843 none none IPR001063
Pfam 231 314 84 PF00189 none Ribosomal protein S3, C-terminal domain IPR001351
Gene3D 1 70 70 G3DSA:3.90.470.10 none none IPR001063
PANTHER 111 318 208 PTHR11760 none none none
SUPERFAMILY 220 318 99 SSF54821 none none IPR001351

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting