Protein : Qrob_P0270100.2 Q. robur
Protein Identifier  ? Qrob_P0270100.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) K02887 - large subunit ribosomal protein L20 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 118  
Kegg Orthology  K02887
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0019843 rRNA binding Interacting selectively and non-covalently with ribosomal RNA.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:3429294 1 117 + 117 none 100.00 117 87.18 2e-60 rpl20 CsCp065 50S ribosomal protein L20
blastp_kegg lcl|pmum:18668056 1 117 + 117 none 100.00 117 85.47 2e-60 rpl20 CP95_p044 ribosomal protein L20
blastp_kegg lcl|pper:PrpeC_p044 1 117 + 117 none 100.00 117 85.47 2e-60 rpl20 ribosomal protein L20
blastp_kegg lcl|fve:10251544 1 117 + 117 none 100.00 117 85.47 3e-59 rpl20 FvH4_C0066 ribosomal protein L20
blastp_kegg lcl|ath:ArthCp045 1 117 + 117 none 100.00 117 79.49 3e-55 rpl20 50S ribosomal protein L20
blastp_kegg lcl|aly:ARALYDRAFT_894040 1 117 + 117 none 100.00 117 79.49 3e-55 ribosomal protein L20
blastp_kegg lcl|aly:ARALYDRAFT_893942 1 117 + 117 none 100.00 117 79.49 3e-55 ribosomal protein L20
blastp_kegg lcl|pda:8890535 1 117 + 117 none 100.00 117 75.21 5e-52 rpl20 PhdaC_p044 50S ribosomal protein L20
blastp_kegg lcl|gmx:3989321 1 117 + 117 Gaps:1 90.77 130 75.42 7e-51 rpl20 GlmaCp043 50S ribosomal protein L20
blastp_kegg lcl|pvu:PhvuCp47 1 117 + 117 Gaps:1 99.16 119 74.58 8e-50 rpl20 ribosomal protein L20
blastp_pdb 3bbo_S 1 117 + 117 none 98.32 119 81.20 3e-50 mol:protein length:119 Ribosomal Protein L20
blastp_pdb 2ghj_E 6 115 + 110 Gaps:2 91.53 118 41.67 4e-16 mol:protein length:118 50S ribosomal protein L20
blastp_pdb 2ghj_D 6 115 + 110 Gaps:2 91.53 118 41.67 4e-16 mol:protein length:118 50S ribosomal protein L20
blastp_pdb 2ghj_B 6 115 + 110 Gaps:2 91.53 118 41.67 4e-16 mol:protein length:118 50S ribosomal protein L20
blastp_pdb 2ghj_A 6 115 + 110 Gaps:2 91.53 118 41.67 4e-16 mol:protein length:118 50S ribosomal protein L20
blastp_pdb 3pip_N 1 101 + 101 Gaps:2 83.90 118 44.44 6e-15 mol:protein length:118 50S ribosomal protein L20
blastp_pdb 3pio_N 1 101 + 101 Gaps:2 83.90 118 44.44 6e-15 mol:protein length:118 50S ribosomal protein L20
blastp_pdb 3dll_N 1 101 + 101 Gaps:2 83.90 118 44.44 6e-15 mol:protein length:118 50S ribosomal protein L20
blastp_pdb 3cf5_N 1 101 + 101 Gaps:2 83.90 118 44.44 6e-15 mol:protein length:118 50S RIBOSOMAL PROTEIN L20
blastp_pdb 2zjr_N 1 101 + 101 Gaps:2 83.90 118 44.44 6e-15 mol:protein length:118 50S ribosomal protein L20
blastp_uniprot_sprot sp|Q4VZJ4|RK20_CUCSA 1 117 + 117 none 100.00 117 87.18 9e-62 50S ribosomal protein L20 chloroplastic OS Cucumis sativus GN rpl20 PE 3 SV 1
blastp_uniprot_sprot sp|Q09WZ4|RK20_MORIN 1 117 + 117 none 100.00 117 83.76 3e-60 50S ribosomal protein L20 chloroplastic OS Morus indica GN rpl20 PE 3 SV 1
blastp_uniprot_sprot sp|A9L9B9|RK20_LEMMI 1 117 + 117 none 100.00 117 83.76 1e-59 50S ribosomal protein L20 chloroplastic OS Lemna minor GN rpl20 PE 3 SV 1
blastp_uniprot_sprot sp|B1A958|RK20_CARPA 1 117 + 117 none 100.00 117 84.62 2e-59 50S ribosomal protein L20 chloroplastic OS Carica papaya GN rpl20 PE 3 SV 1
blastp_uniprot_sprot sp|A4QL42|RK20_DRANE 1 115 + 115 none 98.29 117 80.87 4e-57 50S ribosomal protein L20 chloroplastic OS Draba nemorosa GN rpl20 PE 3 SV 1
blastp_uniprot_sprot sp|A4QLC9|RK20_LEPVR 1 115 + 115 none 98.29 117 80.87 4e-57 50S ribosomal protein L20 chloroplastic OS Lepidium virginicum GN rpl20 PE 3 SV 1
blastp_uniprot_sprot sp|A4QKC8|RK20_BARVE 1 115 + 115 none 98.29 117 80.87 5e-57 50S ribosomal protein L20 chloroplastic OS Barbarea verna GN rpl20 PE 3 SV 1
blastp_uniprot_sprot sp|A4QLL7|RK20_LOBMA 1 115 + 115 none 98.29 117 80.87 5e-57 50S ribosomal protein L20 chloroplastic OS Lobularia maritima GN rpl20 PE 3 SV 1
blastp_uniprot_sprot sp|A4QLV6|RK20_NASOF 1 115 + 115 none 98.29 117 80.87 8e-57 50S ribosomal protein L20 chloroplastic OS Nasturtium officinale GN rpl20 PE 3 SV 1
blastp_uniprot_sprot sp|P56794|RK20_ARATH 1 117 + 117 none 100.00 117 79.49 1e-56 50S ribosomal protein L20 chloroplastic OS Arabidopsis thaliana GN rpl20 PE 3 SV 1

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProDom 21 72 52 PD002389 none RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE none
PANTHER 1 115 115 PTHR10986 none none IPR005813
Phobius 56 76 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 55 55 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 2 115 114 SSF74731 none none none
Phobius 96 116 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 77 95 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
TIGRFAM 1 112 112 TIGR01032 none rplT_bact: ribosomal protein bL20 IPR005813
ProSitePatterns 54 70 17 PS00937 none Ribosomal protein L20 signature. IPR005813
PRINTS 42 71 30 PR00062 none Ribosomal protein L20 signature IPR005813
PRINTS 77 103 27 PR00062 none Ribosomal protein L20 signature IPR005813
PRINTS 12 41 30 PR00062 none Ribosomal protein L20 signature IPR005813
Pfam 2 110 109 PF00453 none Ribosomal protein L20 IPR005813
Gene3D 55 116 62 G3DSA:1.10.1900.20 none none none
Phobius 117 117 1 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 1 115 115 PTHR10986:SF14 none none none

2 Localization

Analysis Start End Length
TMHMM 60 82 22
TMHMM 97 116 19

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting