Protein : Qrob_P0270000.2 Q. robur
Protein Identifier  ? Qrob_P0270000.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K02724 - photosystem II PsbZ protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 63  
Kegg Orthology  K02724
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0009523 photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
GO:0009539 photosystem II reaction center An integral membrane complex containing P680, the chlorophyll a molecule that functions as a primary electron donor. In the light, functioning as a water-plastoquinone oxidoreductase, it transfers electrons from water to plastoquinone.
GO:0042549 photosystem II stabilization The stabilization of the photosystem II protein complex, resulting from the phosphorylation of its structural protein subunits, in a cell actively involved in photosynthesis.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cam:6797474 1 62 + 62 none 100.00 62 96.77 1e-31 psbZ CiarC_p014 photosystem II protein Z
blastp_kegg lcl|cit:4271203 1 62 + 62 none 100.00 62 96.77 1e-31 psbZ CisiCp018 photosystem II protein Z
blastp_kegg lcl|vvi:4025086 1 62 + 62 none 100.00 62 95.16 2e-31 psbZ ViviCp018 photosystem II reaction center Z protein
blastp_kegg lcl|pop:Poptr_cp019 1 62 + 62 none 100.00 62 95.16 4e-31 psbZ photosystem II protein Z
blastp_kegg lcl|sot:4099964 1 62 + 62 none 100.00 62 95.16 8e-31 psbZ SotuCp018 photosystem II reaction center Z protein
blastp_kegg lcl|sly:3950482 1 62 + 62 none 100.00 62 95.16 8e-31 psbZ LyesC2p072 photosystem II protein Z
blastp_kegg lcl|bdi:100821212 1 62 + 62 none 75.61 82 91.94 9e-31 photosystem II reaction center protein Z-like
blastp_kegg lcl|aly:ARALYDRAFT_675814 1 62 + 62 none 81.58 76 95.16 1e-30 hypothetical protein
blastp_kegg lcl|aly:ARALYDRAFT_894019 1 62 + 62 none 100.00 62 95.16 1e-30 photosystem II protein Z
blastp_kegg lcl|ath:ArthCp019 1 62 + 62 none 100.00 62 95.16 1e-30 psbZ photosystem II reaction center Z protein
blastp_pdb 3arc_Z 1 58 + 58 none 93.55 62 51.72 2e-14 mol:protein length:62 Photosystem II reaction center protein Z
blastp_pdb 3a0h_Z 1 58 + 58 none 93.55 62 51.72 2e-14 mol:protein length:62 Photosystem II reaction center protein Z
blastp_pdb 3a0b_Z 1 58 + 58 none 93.55 62 51.72 2e-14 mol:protein length:62 Photosystem II reaction center protein Z
blastp_pdb 2axt_Z 1 58 + 58 none 93.55 62 51.72 2e-14 mol:protein length:62 Photosystem II reaction center Z protein
blastp_pdb 1s5l_Z 1 58 + 58 none 93.55 62 51.72 2e-14 mol:protein length:62 Photosystem II reaction center Z protein
blastp_pdb 3prr_Z 1 58 + 58 none 93.55 62 51.72 2e-14 mol:protein length:62 Photosystem II reaction center protein ycf12
blastp_pdb 3prq_Z 1 58 + 58 none 93.55 62 51.72 2e-14 mol:protein length:62 Photosystem II reaction center protein Z
blastp_pdb 3kzi_Z 1 58 + 58 none 93.55 62 51.72 2e-14 mol:protein length:62 Photosystem II reaction center protein Z
blastp_pdb 3bz2_Z 1 58 + 58 none 93.55 62 51.72 2e-14 mol:protein length:62 Photosystem II reaction center protein Z
blastp_pdb 3bz1_Z 1 58 + 58 none 93.55 62 51.72 2e-14 mol:protein length:62 Photosystem II reaction center protein Z
blastp_uniprot_sprot sp|Q09MI1|PSBZ_CITSI 1 62 + 62 none 100.00 62 96.77 4e-33 Photosystem II reaction center protein Z OS Citrus sinensis GN psbZ PE 3 SV 1
blastp_uniprot_sprot sp|Q0ZJ23|PSBZ_VITVI 1 62 + 62 none 100.00 62 95.16 7e-33 Photosystem II reaction center protein Z OS Vitis vinifera GN psbZ PE 3 SV 1
blastp_uniprot_sprot sp|Q5QA82|PSBZ_ACOGR 1 62 + 62 none 100.00 62 95.16 7e-33 Photosystem II reaction center protein Z OS Acorus gramineus GN psbZ PE 3 SV 1
blastp_uniprot_sprot sp|Q332Y1|PSBZ_LACSA 1 62 + 62 none 100.00 62 95.16 1e-32 Photosystem II reaction center protein Z OS Lactuca sativa GN psbZ PE 3 SV 1
blastp_uniprot_sprot sp|Q49L01|PSBZ_EUCGG 1 62 + 62 none 100.00 62 96.77 1e-32 Photosystem II reaction center protein Z OS Eucalyptus globulus subsp. globulus GN psbZ PE 3 SV 1
blastp_uniprot_sprot sp|Q14FG0|PSBZ_POPAL 1 62 + 62 none 100.00 62 95.16 1e-32 Photosystem II reaction center protein Z OS Populus alba GN psbZ PE 3 SV 1
blastp_uniprot_sprot sp|Q9M3M6|PSBZ_SPIOL 1 62 + 62 none 100.00 62 93.55 2e-32 Photosystem II reaction center protein Z OS Spinacia oleracea GN psbZ PE 3 SV 1
blastp_uniprot_sprot sp|A0A332|PSBZ_COFAR 1 62 + 62 none 100.00 62 93.55 2e-32 Photosystem II reaction center protein Z OS Coffea arabica GN psbZ PE 3 SV 1
blastp_uniprot_sprot sp|Q9BBT2|PSBZ_LOTJA 1 62 + 62 none 100.00 62 95.16 2e-32 Photosystem II reaction center protein Z OS Lotus japonicus GN psbZ PE 3 SV 1
blastp_uniprot_sprot sp|Q32902|PSBZ_PEA 1 62 + 62 none 100.00 62 95.16 3e-32 Photosystem II reaction center protein Z OS Pisum sativum GN psbZ PE 3 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 44 61 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 3 21 19 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 22 28 7 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
ProDom 5 62 58 PD004770 none PHOTOSYSTEM II CENTER REACTION PHOTOSYNTHESIS TRANSMEMBRANE THYLAKOID CHLOROPLAST Z PLASTID IPR002644
Phobius 62 62 1 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 4 62 59 PF01737 none YCF9 IPR002644
Phobius 1 28 28 SIGNAL_PEPTIDE none Signal peptide region none
Gene3D 1 62 62 G3DSA:1.10.287.740 none none IPR002644
Phobius 29 43 15 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
TIGRFAM 4 61 58 TIGR03043 none PS_II_psbZ: photosystem II core protein PsbZ IPR002644
Hamap 1 62 62 MF_00644 none Photosystem II reaction center protein Z [psbZ]. IPR002644
SUPERFAMILY 1 61 61 SSF161055 none none none

4 Localization

Analysis Start End Length
TMHMM 39 61 22
TMHMM 7 29 22
SignalP_GRAM_POSITIVE 1 28 27
SignalP_EUK 1 28 27

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 28   Secretory pathway 1 0.984 0.014 NON-PLANT 28