Protein : Qrob_P0268950.2 Q. robur
Protein Identifier  ? Qrob_P0268950.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) 3.1.13.3 - Oligonucleotidase. Code Enzyme  EC:3.1.13.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 267  
Kegg Orthology  K13288
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0004527 exonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103330900 2 263 + 262 Gaps:14 98.41 252 74.60 2e-128 oligoribonuclease
blastp_kegg lcl|pper:PRUPE_ppa010434mg 2 263 + 262 Gaps:17 98.39 249 75.92 2e-127 hypothetical protein
blastp_kegg lcl|vvi:100251263 2 266 + 265 Gaps:23 98.78 245 73.97 2e-123 oligoribonuclease-like
blastp_kegg lcl|pxb:103946164 2 265 + 264 Gaps:22 98.80 249 74.39 2e-122 oligoribonuclease
blastp_kegg lcl|mdm:103409218 2 265 + 264 Gaps:22 82.27 299 73.58 7e-120 oligoribonuclease-like
blastp_kegg lcl|gmx:100527858 2 266 + 265 Gaps:31 98.35 242 75.21 2e-119 uncharacterized LOC100527858
blastp_kegg lcl|cam:101490129 2 260 + 259 Gaps:29 96.64 238 72.61 7e-116 oligoribonuclease-like
blastp_kegg lcl|tcc:TCM_042039 2 266 + 265 Gaps:23 98.80 251 68.55 6e-114 Polynucleotidyl transferase ribonuclease H-like superfamily protein putative isoform 1
blastp_kegg lcl|cit:102621451 2 262 + 261 Gaps:18 97.59 249 68.72 2e-112 oligoribonuclease-like
blastp_kegg lcl|csv:101231897 2 263 + 262 Gaps:15 97.63 253 69.64 2e-112 oligoribonuclease-like
blastp_pdb 1j9a_A 87 260 + 174 Gaps:1 94.02 184 47.98 2e-48 mol:protein length:184 OLIGORIBONUCLEASE
blastp_pdb 3tr8_B 87 263 + 177 Gaps:1 94.62 186 46.02 8e-47 mol:protein length:186 Oligoribonuclease
blastp_pdb 3tr8_A 87 263 + 177 Gaps:1 94.62 186 46.02 8e-47 mol:protein length:186 Oligoribonuclease
blastp_pdb 2igi_B 87 260 + 174 Gaps:1 96.11 180 46.24 4e-46 mol:protein length:180 Oligoribonuclease
blastp_pdb 2igi_A 87 260 + 174 Gaps:1 96.11 180 46.24 4e-46 mol:protein length:180 Oligoribonuclease
blastp_pdb 1yta_D 87 260 + 174 Gaps:1 96.11 180 46.24 4e-46 mol:protein length:180 Oligoribonuclease
blastp_pdb 1yta_C 87 260 + 174 Gaps:1 96.11 180 46.24 4e-46 mol:protein length:180 Oligoribonuclease
blastp_pdb 1yta_B 87 260 + 174 Gaps:1 96.11 180 46.24 4e-46 mol:protein length:180 Oligoribonuclease
blastp_pdb 1yta_A 87 260 + 174 Gaps:1 96.11 180 46.24 4e-46 mol:protein length:180 Oligoribonuclease
blastp_pdb 2gbz_A 87 255 + 169 Gaps:1 86.60 194 41.67 1e-37 mol:protein length:194 Oligoribonuclease
blastp_uniprot_sprot sp|Q9ZVE0|ORN_ARATH 82 263 + 182 none 81.98 222 74.18 3e-101 Oligoribonuclease OS Arabidopsis thaliana GN At2g26970 PE 2 SV 2
blastp_uniprot_sprot sp|Q9D8S4|ORN_MOUSE 87 259 + 173 none 73.00 237 50.87 2e-59 Oligoribonuclease mitochondrial OS Mus musculus GN Rexo2 PE 1 SV 2
blastp_uniprot_sprot sp|A2VE52|ORN_BOVIN 87 259 + 173 none 73.00 237 50.87 2e-59 Oligoribonuclease mitochondrial OS Bos taurus GN REXO2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9Y3B8|ORN_HUMAN 87 259 + 173 none 73.00 237 51.45 2e-59 Oligoribonuclease mitochondrial OS Homo sapiens GN REXO2 PE 1 SV 3
blastp_uniprot_sprot sp|Q5U1X1|ORN_RAT 87 259 + 173 none 73.00 237 50.87 2e-59 Oligoribonuclease mitochondrial OS Rattus norvegicus GN Rexo2 PE 2 SV 1
blastp_uniprot_sprot sp|A1U4D2|ORN_MARAV 87 260 + 174 Gaps:1 96.11 180 52.60 2e-53 Oligoribonuclease OS Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN orn PE 3 SV 1
blastp_uniprot_sprot sp|Q9VCI0|ORN_DROME 48 260 + 213 Gaps:14 94.31 211 45.73 2e-53 Probable oligoribonuclease OS Drosophila melanogaster GN CG10214 PE 1 SV 1
blastp_uniprot_sprot sp|A1WTK7|ORN_HALHL 87 260 + 174 Gaps:1 94.54 183 47.98 4e-49 Oligoribonuclease OS Halorhodospira halophila (strain DSM 244 / SL1) GN orn PE 3 SV 1
blastp_uniprot_sprot sp|P57885|ORN_PASMU 87 259 + 173 Gaps:1 93.48 184 49.42 6e-49 Oligoribonuclease OS Pasteurella multocida (strain Pm70) GN orn PE 3 SV 1
blastp_uniprot_sprot sp|Q17819|ORN_CAEEL 87 264 + 178 Gaps:2 91.19 193 48.86 1e-48 Probable oligoribonuclease OS Caenorhabditis elegans GN C08B6.8 PE 3 SV 1

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 86 260 175 SM00479 none none IPR006055
Gene3D 85 260 176 G3DSA:3.30.420.10 none none IPR012337
SUPERFAMILY 85 259 175 SSF53098 none none IPR012337
PANTHER 76 266 191 PTHR11046 none none none
Pfam 88 250 163 PF00929 none Exonuclease IPR013520

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting