Protein : Qrob_P0266770.2 Q. robur
Protein Identifier  ? Qrob_P0266770.2 Organism . Name  Quercus robur
Score  99.1 Score Type  egn
Protein Description  (M=2) PTHR11785//PTHR11785:SF275 - AMINO ACID TRANSPORTER // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 583  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0003333 amino acid transmembrane transport The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore.
GO:0015171 amino acid transmembrane transporter activity Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cam:101511650 1 572 + 572 Gaps:4 99.13 577 77.62 0.0 cationic amino acid transporter 7 chloroplastic-like
blastp_kegg lcl|gmx:100816464 12 578 + 567 Gaps:1 96.76 587 79.93 0.0 cationic amino acid transporter 7 chloroplastic-like
blastp_kegg lcl|vvi:100242904 1 580 + 580 Gaps:3 99.49 586 77.02 0.0 high affinity cationic amino acid transporter 1-like
blastp_kegg lcl|cit:102626518 1 578 + 578 Gaps:3 99.15 586 76.59 0.0 cationic amino acid transporter 7 chloroplastic-like
blastp_kegg lcl|tcc:TCM_044268 14 576 + 563 Gaps:1 90.53 623 77.13 0.0 Cationic amino acid transporter 7
blastp_kegg lcl|pvu:PHAVU_007G023700g 5 578 + 574 Gaps:2 98.80 583 79.34 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0010s24730g 12 576 + 565 Gaps:15 96.67 600 76.03 0.0 POPTRDRAFT_567910 cationic amino acid transporter 6 family protein
blastp_kegg lcl|mtr:MTR_077s0009 1 578 + 578 Gaps:44 99.20 623 70.71 0.0 High affinity cationic amino acid transporter
blastp_kegg lcl|rcu:RCOM_1542880 4 578 + 575 Gaps:12 98.44 576 75.84 0.0 cationic amino acid transporter putative
blastp_kegg lcl|mdm:103408828 5 578 + 574 Gaps:6 97.10 587 77.89 0.0 cationic amino acid transporter 7 chloroplastic-like
blastp_pdb 3gia_A 51 379 + 329 Gaps:27 69.82 444 23.23 9e-12 mol:protein length:444 Uncharacterized protein MJ0609
blastp_pdb 3gi9_C 51 379 + 329 Gaps:27 69.82 444 23.23 9e-12 mol:protein length:444 Uncharacterized protein MJ0609
blastp_pdb 3gi8_C 51 379 + 329 Gaps:39 69.82 444 25.48 1e-11 mol:protein length:444 Uncharacterized protein MJ0609
blastp_pdb 3l1l_A 65 397 + 333 Gaps:32 70.34 445 26.20 3e-07 mol:protein length:445 Arginine/agmatine antiporter
blastp_pdb 3ncy_D 65 397 + 333 Gaps:32 70.34 445 25.88 6e-06 mol:protein length:445 AdiC
blastp_pdb 3ncy_C 65 397 + 333 Gaps:32 70.34 445 25.88 6e-06 mol:protein length:445 AdiC
blastp_pdb 3ncy_B 65 397 + 333 Gaps:32 70.34 445 25.88 6e-06 mol:protein length:445 AdiC
blastp_pdb 3ncy_A 65 397 + 333 Gaps:32 70.34 445 25.88 6e-06 mol:protein length:445 AdiC
blastp_uniprot_sprot sp|Q9SQZ0|CAAT7_ARATH 2 568 + 567 Gaps:4 97.43 584 72.06 0.0 Cationic amino acid transporter 7 chloroplastic OS Arabidopsis thaliana GN CAT7 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LZ20|CAAT6_ARATH 8 575 + 568 Gaps:2 97.43 583 70.95 0.0 Cationic amino acid transporter 6 chloroplastic OS Arabidopsis thaliana GN CAT6 PE 2 SV 1
blastp_uniprot_sprot sp|Q84MA5|CAAT1_ARATH 5 558 + 554 Gaps:22 91.58 594 43.38 3e-151 Cationic amino acid transporter 1 OS Arabidopsis thaliana GN CAT1 PE 1 SV 1
blastp_uniprot_sprot sp|O64759|CAAT5_ARATH 5 555 + 551 Gaps:32 95.08 569 41.96 4e-131 Cationic amino acid transporter 5 OS Arabidopsis thaliana GN CAT5 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SHH0|CAAT8_ARATH 7 565 + 559 Gaps:32 93.73 590 41.23 4e-121 Cationic amino acid transporter 8 vacuolar OS Arabidopsis thaliana GN CAT8 PE 1 SV 1
blastp_uniprot_sprot sp|Q9C5D6|CAAT9_ARATH 37 548 + 512 Gaps:35 90.16 569 32.36 2e-67 Cationic amino acid transporter 9 chloroplastic OS Arabidopsis thaliana GN CAT9 PE 2 SV 1
blastp_uniprot_sprot sp|Q8W4K3|CAAT4_ARATH 37 435 + 399 Gaps:15 66.00 600 34.60 8e-67 Cationic amino acid transporter 4 vacuolar OS Arabidopsis thaliana GN CAT4 PE 1 SV 1
blastp_uniprot_sprot sp|P30825|CTR1_HUMAN 44 564 + 521 Gaps:95 96.34 629 29.21 2e-65 High affinity cationic amino acid transporter 1 OS Homo sapiens GN SLC7A1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8GYB4|CAAT3_ARATH 38 548 + 511 Gaps:71 92.94 609 29.86 3e-64 Cationic amino acid transporter 3 mitochondrial OS Arabidopsis thaliana GN CAT3 PE 2 SV 1
blastp_uniprot_sprot sp|A8I499|CTR2_PIG 48 578 + 531 Gaps:89 92.54 657 29.44 1e-63 Low affinity cationic amino acid transporter 2 OS Sus scrofa GN SLC7A2 PE 2 SV 1
rpsblast_cdd gnl|CDD|129984 44 555 + 512 Gaps:32 96.59 557 34.01 1e-112 TIGR00906 2A0303 cationic amino acid transport permease.
rpsblast_cdd gnl|CDD|129987 50 461 + 412 Gaps:18 94.17 429 32.43 1e-59 TIGR00909 2A0306 amino acid transporter.

35 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 58 58 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 270 289 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 88 108 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 336 359 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 206 228 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 435 435 PTHR11785 none none IPR002293
PANTHER 494 579 86 PTHR11785 none none IPR002293
Phobius 410 431 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 54 471 418 PF13520 none Amino acid permease IPR002293
Phobius 313 335 23 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 432 442 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 494 579 86 PTHR11785:SF275 none none none
Phobius 59 82 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 443 465 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 530 548 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 435 435 PTHR11785:SF275 none none none
Phobius 229 247 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 120 139 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 83 87 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 140 177 38 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 491 501 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 503 553 51 PF13906 none C-terminus of AA_permease IPR029485
Phobius 549 582 34 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 502 524 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 466 470 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 471 490 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 386 404 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 360 385 26 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 200 205 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 248 269 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

14 Localization

Analysis Start End Length
TMHMM 444 463 19
TMHMM 82 104 22
TMHMM 473 495 22
TMHMM 206 228 22
TMHMM 529 551 22
TMHMM 336 358 22
TMHMM 388 405 17
TMHMM 254 273 19
TMHMM 502 524 22
TMHMM 286 308 22
TMHMM 56 78 22
TMHMM 409 431 22
TMHMM 182 199 17
TMHMM 117 139 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 37   Mitochondrion 2 0.028 0.834 NON-PLANT 37