Protein : Qrob_P0265610.2 Q. robur
Protein Identifier  ? Qrob_P0265610.2 Organism . Name  Quercus robur
Score  94.0 Score Type  egn
Protein Description  (M=2) K02989 - small subunit ribosomal protein S5e Gene Prediction Quality  validated
Protein length 

Sequence

Length: 217  
Kegg Orthology  K02989
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015935 small ribosomal subunit The smaller of the two subunits of a ribosome.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa011341mg 1 216 + 216 Gaps:2 100.00 214 88.79 9e-138 hypothetical protein
blastp_kegg lcl|pmum:103339594 10 216 + 207 Gaps:2 97.16 211 91.71 2e-136 40S ribosomal protein S5-like
blastp_kegg lcl|pxb:103968058 15 216 + 202 none 97.12 208 92.08 3e-136 40S ribosomal protein S5-like
blastp_kegg lcl|pper:PRUPE_ppa011243mg 20 216 + 197 none 90.37 218 94.42 5e-136 hypothetical protein
blastp_kegg lcl|mdm:103449587 15 216 + 202 none 97.12 208 91.58 6e-136 40S ribosomal protein S5-like
blastp_kegg lcl|pmum:103339595 20 216 + 197 none 90.37 218 94.42 6e-136 40S ribosomal protein S5-like
blastp_kegg lcl|pxb:103963247 15 216 + 202 none 97.12 208 91.58 4e-135 40S ribosomal protein S5
blastp_kegg lcl|mdm:103453756 15 216 + 202 none 97.12 208 91.58 4e-135 40S ribosomal protein S5
blastp_kegg lcl|pxb:103952718 19 216 + 198 none 95.19 208 92.42 1e-134 40S ribosomal protein S5-like
blastp_kegg lcl|pxb:103932056 20 216 + 197 none 94.26 209 92.89 1e-134 40S ribosomal protein S5-like
blastp_pdb 3iz6_F 29 216 + 188 none 94.00 200 90.96 3e-126 mol:protein length:200 40S ribosomal protein S5 (S7p)
blastp_pdb 2zkq_g 27 216 + 190 Gaps:1 92.65 204 79.89 8e-113 mol:protein length:204 40S Ribosomal protein S5e
blastp_pdb 3u5g_F 4 216 + 213 Gaps:11 89.78 225 72.77 3e-105 mol:protein length:225 40S ribosomal protein S5
blastp_pdb 3u5c_F 4 216 + 213 Gaps:11 89.78 225 72.77 3e-105 mol:protein length:225 40S ribosomal protein S5
blastp_pdb 3o30_D 4 216 + 213 Gaps:11 89.78 225 72.77 3e-105 mol:protein length:225 40S ribosomal protein S5
blastp_pdb 3o2z_D 4 216 + 213 Gaps:11 89.78 225 72.77 3e-105 mol:protein length:225 40S ribosomal protein S5
blastp_pdb 3izb_F 4 216 + 213 Gaps:11 89.78 225 72.77 3e-105 mol:protein length:225 40S ribosomal protein rpS5 (S7p)
blastp_pdb 3jyv_G 28 216 + 189 Gaps:3 100.00 186 75.81 5e-103 mol:protein length:186 40S ribosomal protein S5
blastp_pdb 2noq_F 67 216 + 150 none 100.00 150 80.67 1e-86 mol:protein length:150 40S ribosomal protein S5
blastp_pdb 1s1h_G 67 216 + 150 none 100.00 150 80.67 1e-86 mol:protein length:150 40S ribosomal protein S5
blastp_uniprot_sprot sp|O65731|RS5_CICAR 27 216 + 190 none 96.45 197 92.63 2e-131 40S ribosomal protein S5 (Fragment) OS Cicer arietinum GN RPS5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZUT9|RS51_ARATH 23 216 + 194 none 93.72 207 89.69 2e-130 40S ribosomal protein S5-1 OS Arabidopsis thaliana GN RPS5A PE 2 SV 1
blastp_uniprot_sprot sp|P51427|RS52_ARATH 26 216 + 191 none 92.27 207 88.48 8e-128 40S ribosomal protein S5-2 OS Arabidopsis thaliana GN RPS5B PE 2 SV 2
blastp_uniprot_sprot sp|P46782|RS5_HUMAN 27 216 + 190 Gaps:1 92.65 204 79.89 3e-112 40S ribosomal protein S5 OS Homo sapiens GN RPS5 PE 1 SV 4
blastp_uniprot_sprot sp|Q5E988|RS5_BOVIN 27 216 + 190 Gaps:1 92.65 204 79.89 3e-112 40S ribosomal protein S5 OS Bos taurus GN RPS5 PE 2 SV 3
blastp_uniprot_sprot sp|P97461|RS5_MOUSE 27 216 + 190 Gaps:1 92.65 204 79.37 2e-111 40S ribosomal protein S5 OS Mus musculus GN Rps5 PE 2 SV 3
blastp_uniprot_sprot sp|Q7RVI1|RS5_NEUCR 20 216 + 197 Gaps:3 91.08 213 77.32 3e-111 40S ribosomal protein S5 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN rps-5 PE 3 SV 2
blastp_uniprot_sprot sp|Q24186|RS5A_DROME 10 216 + 207 Gaps:9 93.86 228 71.96 2e-109 40S ribosomal protein S5a OS Drosophila melanogaster GN RpS5a PE 1 SV 1
blastp_uniprot_sprot sp|P24050|RS5_RAT 27 216 + 190 Gaps:1 92.65 204 78.31 2e-109 40S ribosomal protein S5 OS Rattus norvegicus GN Rps5 PE 1 SV 3
blastp_uniprot_sprot sp|Q9VFE4|RS5B_DROME 9 216 + 208 Gaps:6 87.83 230 74.26 4e-108 40S ribosomal protein S5b OS Drosophila melanogaster GN RpS5b PE 2 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 28 216 189 G3DSA:1.10.455.10 none none IPR023798
TIGRFAM 28 216 189 TIGR01028 none uS7_euk_arch: ribosomal protein uS7 IPR005716
ProSitePatterns 82 108 27 PS00052 none Ribosomal protein S7 signature. IPR020606
SUPERFAMILY 29 216 188 SSF47973 none none IPR023798
PIRSF 1 216 216 PIRSF002122 none none IPR000235
PANTHER 9 216 208 PTHR11205 none none IPR000235
Pfam 62 216 155 PF00177 none Ribosomal protein S7p/S5e IPR023798

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting