Protein : Qrob_P0264380.2 Q. robur
Protein Identifier  ? Qrob_P0264380.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K11275 - histone H1/5 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 177  
Kegg Orthology  K11275
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0000786 nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO:0006334 nucleosome assembly The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0002s20090g 1 171 + 171 Gaps:15 92.31 195 62.22 2e-53 POPTRDRAFT_552493 hypothetical protein
blastp_kegg lcl|tcc:TCM_004750 13 162 + 150 Gaps:17 82.99 194 64.60 3e-51 Histone H1 putative
blastp_kegg lcl|rcu:RCOM_1348230 1 164 + 164 Gaps:29 97.02 168 62.58 3e-45 histone h1/h5 putative
blastp_kegg lcl|pvu:PHAVU_007G216900g 1 171 + 171 Gaps:53 92.86 196 53.85 1e-42 hypothetical protein
blastp_kegg lcl|vvi:100245167 15 173 + 159 Gaps:14 88.71 186 55.15 2e-41 uncharacterized LOC100245167
blastp_kegg lcl|gmx:100306187 8 167 + 160 Gaps:20 93.68 190 54.49 1e-40 uncharacterized LOC100306187
blastp_kegg lcl|sot:102586395 22 89 + 68 Gaps:1 23.67 283 73.13 4e-23 histone H1-like
blastp_kegg lcl|atr:s00057p00112340 22 166 + 145 Gaps:31 78.95 190 44.00 3e-22 AMTR_s00057p00112340 hypothetical protein
blastp_kegg lcl|mus:103993961 1 90 + 90 Gaps:2 47.83 184 54.55 4e-22 histone H1
blastp_kegg lcl|mtr:MTR_5g021730 16 101 + 86 none 52.44 164 55.81 9e-22 Histone H1
blastp_uniprot_sprot sp|P23444|H1_MAIZE 19 90 + 72 none 29.27 246 61.11 1e-21 Histone H1 OS Zea mays PE 2 SV 2
blastp_uniprot_sprot sp|P37218|H1_SOLLC 16 89 + 74 Gaps:1 25.44 287 68.49 2e-21 Histone H1 OS Solanum lycopersicum PE 3 SV 1
blastp_uniprot_sprot sp|P27806|H1_WHEAT 22 90 + 69 none 28.99 238 57.97 8e-20 Histone H1 OS Triticum aestivum PE 2 SV 2
blastp_uniprot_sprot sp|P40267|H1_SOLPN 17 90 + 74 none 36.63 202 50.00 1e-19 Histone H1 OS Solanum pennellii PE 2 SV 1
blastp_uniprot_sprot sp|P26569|H12_ARATH 3 89 + 87 Gaps:7 29.30 273 56.25 2e-18 Histone H1.2 OS Arabidopsis thaliana GN At2g30620 PE 1 SV 1
blastp_uniprot_sprot sp|Q08865|H12_VOLCA 22 90 + 69 Gaps:1 29.05 241 55.71 4e-18 Histone H1-II OS Volvox carteri GN H1-II PE 2 SV 3
blastp_uniprot_sprot sp|Q9M5W4|H1_EUPES 4 88 + 85 Gaps:7 34.06 229 60.26 6e-17 Histone H1 OS Euphorbia esula PE 2 SV 1
blastp_uniprot_sprot sp|Q08864|H11_VOLCA 22 158 + 137 Gaps:24 56.32 261 37.41 6e-14 Histone H1-I OS Volvox carteri GN H1-I PE 2 SV 3
blastp_uniprot_sprot sp|P26568|H11_ARATH 22 89 + 68 Gaps:1 24.45 274 59.70 1e-13 Histone H1.1 OS Arabidopsis thaliana GN At1g06760 PE 2 SV 1
blastp_uniprot_sprot sp|P54671|H1_DICDI 22 90 + 69 Gaps:1 37.78 180 52.94 2e-13 Histone H1 OS Dictyostelium discoideum GN H1 PE 1 SV 3
rpsblast_cdd gnl|CDD|197772 19 85 + 67 Gaps:1 100.00 66 51.52 2e-13 smart00526 H15 Domain in histone families 1 and 5.
rpsblast_cdd gnl|CDD|201291 22 86 + 65 Gaps:1 85.71 77 48.48 6e-10 pfam00538 Linker_histone linker histone H1 and H5 family. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types.
rpsblast_cdd gnl|CDD|28954 22 98 + 77 Gaps:6 92.05 88 48.15 1e-07 cd00073 H15 linker histone 1 and histone 5 domains the basic subunit of chromatin is the nucleosome consisting of an octamer of core histones two full turns of DNA a linker histone (H1 or H5) and a variable length of linker DNA H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala Lys Pro) thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber.

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 19 86 68 SM00526 none Domain in histone families 1 and 5 IPR005818
Gene3D 20 97 78 G3DSA:1.10.10.10 none none IPR011991
Pfam 22 90 69 PF00538 none linker histone H1 and H5 family IPR005818
SUPERFAMILY 20 101 82 SSF46785 none none none
PRINTS 35 52 18 PR00624 none Histone H5 signature IPR005819
PRINTS 139 156 18 PR00624 none Histone H5 signature IPR005819
PRINTS 8 29 22 PR00624 none Histone H5 signature IPR005819
ProSiteProfiles 21 91 71 PS51504 none Linker histone H1/H5 globular (H15) domain profile. IPR005818
PANTHER 22 85 64 PTHR11467 none none none
PANTHER 104 146 43 PTHR11467 none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

0 Targeting