Protein : Qrob_P0255620.2 Q. robur
Protein Identifier  ? Qrob_P0255620.2 Organism . Name  Quercus robur
Score  7.0 Score Type  egn
Protein Description  (M=5) K12462 - Rho GDP-dissociation inhibitor Gene Prediction Quality  validated
Protein length 

Sequence

Length: 252  
Kegg Orthology  K12462
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0005094 Rho GDP-dissociation inhibitor activity Prevents the dissociation of GDP from the small GTPase Rho, thereby preventing GTP from binding.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pvu:PHAVU_002G172100g 5 250 + 246 Gaps:10 99.58 237 75.00 3e-125 hypothetical protein
blastp_kegg lcl|gmx:100806852 5 250 + 246 Gaps:11 99.58 236 76.17 9e-125 rho GDP-dissociation inhibitor 1-like
blastp_kegg lcl|cam:101502372 1 250 + 250 Gaps:6 99.59 245 75.00 6e-122 rho GDP-dissociation inhibitor 1-like
blastp_kegg lcl|tcc:TCM_020152 1 251 + 251 Gaps:5 99.20 250 70.16 9e-116 Immunoglobulin E-set superfamily protein isoform 1
blastp_kegg lcl|pxb:103960376 1 251 + 251 Gaps:8 100.00 253 69.17 2e-114 rho GDP-dissociation inhibitor 1-like
blastp_kegg lcl|pper:PRUPE_ppa010306mg 1 251 + 251 Gaps:10 100.00 255 70.59 3e-112 hypothetical protein
blastp_kegg lcl|pmum:103322571 1 251 + 251 Gaps:10 100.00 255 69.80 5e-112 rho GDP-dissociation inhibitor 1-like
blastp_kegg lcl|gmx:100780525 5 250 + 246 Gaps:13 99.58 238 73.42 7e-111 rho GDP-dissociation inhibitor 1-like
blastp_kegg lcl|mtr:MTR_8g097200 1 250 + 250 Gaps:16 99.57 235 73.08 5e-110 Rho GDP-dissociation inhibitor
blastp_kegg lcl|pop:POPTR_0002s23560g 1 248 + 248 Gaps:9 99.20 249 68.42 7e-107 POPTRDRAFT_409676 hypothetical protein
blastp_pdb 1hh4_E 77 247 + 171 Gaps:6 83.82 204 41.52 2e-33 mol:protein length:204 RHO GDP-DISSOCIATION INHIBITOR 1
blastp_pdb 1hh4_D 77 247 + 171 Gaps:6 83.82 204 41.52 2e-33 mol:protein length:204 RHO GDP-DISSOCIATION INHIBITOR 1
blastp_pdb 1cc0_F 77 247 + 171 Gaps:6 83.82 204 41.52 2e-33 mol:protein length:204 rho GDP dissociation inhibitor alpha
blastp_pdb 1cc0_E 77 247 + 171 Gaps:6 83.82 204 41.52 2e-33 mol:protein length:204 rho GDP dissociation inhibitor alpha
blastp_pdb 1ds6_B 76 247 + 172 Gaps:4 95.56 180 42.44 4e-33 mol:protein length:180 RHO GDP-DISSOCIATION INHIBITOR 2
blastp_pdb 1fst_B 77 247 + 171 Gaps:6 93.96 182 40.94 1e-32 mol:protein length:182 RHO GDP-DISSOCIATION INHIBITOR 1
blastp_pdb 1fst_A 77 247 + 171 Gaps:6 93.96 182 40.94 1e-32 mol:protein length:182 RHO GDP-DISSOCIATION INHIBITOR 1
blastp_pdb 1doa_B 77 247 + 171 Gaps:6 78.08 219 40.94 2e-32 mol:protein length:219 PROTEIN (GDP-DISSOCIATION INHIBITOR 1)
blastp_pdb 2jhz_B 115 247 + 133 Gaps:4 97.83 138 37.04 1e-22 mol:protein length:138 RHO GDP-DISSOCIATION INHIBITOR 1
blastp_pdb 2jhz_A 115 247 + 133 Gaps:4 97.83 138 37.04 1e-22 mol:protein length:138 RHO GDP-DISSOCIATION INHIBITOR 1
blastp_uniprot_sprot sp|Q9SFC6|GDIR_ARATH 57 248 + 192 Gaps:6 77.50 240 67.20 1e-87 Rho GDP-dissociation inhibitor 1 OS Arabidopsis thaliana GN GDI1 PE 1 SV 1
blastp_uniprot_sprot sp|Q61599|GDIR2_MOUSE 53 247 + 195 Gaps:5 98.00 200 40.31 3e-34 Rho GDP-dissociation inhibitor 2 OS Mus musculus GN Arhgdib PE 1 SV 3
blastp_uniprot_sprot sp|Q9TU03|GDIR2_BOVIN 60 247 + 188 Gaps:4 94.00 200 40.96 5e-34 Rho GDP-dissociation inhibitor 2 OS Bos taurus GN ARHGDIB PE 2 SV 3
blastp_uniprot_sprot sp|Q4R4J0|GDIR1_MACFA 77 247 + 171 Gaps:6 83.82 204 41.52 7e-33 Rho GDP-dissociation inhibitor 1 OS Macaca fascicularis GN ARHGDIA PE 2 SV 1
blastp_uniprot_sprot sp|P52565|GDIR1_HUMAN 77 247 + 171 Gaps:6 83.82 204 41.52 7e-33 Rho GDP-dissociation inhibitor 1 OS Homo sapiens GN ARHGDIA PE 1 SV 3
blastp_uniprot_sprot sp|P52566|GDIR2_HUMAN 76 247 + 172 Gaps:4 85.57 201 42.44 2e-32 Rho GDP-dissociation inhibitor 2 OS Homo sapiens GN ARHGDIB PE 1 SV 3
blastp_uniprot_sprot sp|Q5XI73|GDIR1_RAT 77 247 + 171 Gaps:6 83.82 204 40.94 6e-32 Rho GDP-dissociation inhibitor 1 OS Rattus norvegicus GN Arhgdia PE 1 SV 1
blastp_uniprot_sprot sp|Q99PT1|GDIR1_MOUSE 77 247 + 171 Gaps:6 83.82 204 40.94 6e-32 Rho GDP-dissociation inhibitor 1 OS Mus musculus GN Arhgdia PE 1 SV 3
blastp_uniprot_sprot sp|P19803|GDIR1_BOVIN 77 247 + 171 Gaps:6 83.82 204 40.94 6e-32 Rho GDP-dissociation inhibitor 1 OS Bos taurus GN ARHGDIA PE 1 SV 3
blastp_uniprot_sprot sp|Q95UQ1|GDIR1_DICDI 75 247 + 173 Gaps:20 89.85 197 36.72 2e-30 Putative rho GDP-dissociation inhibitor 1 OS Dictyostelium discoideum GN rdiA PE 1 SV 1

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 55 248 194 SSF81296 none none IPR014756
Pfam 57 246 190 PF02115 "Reactome:REACT_11044" RHO protein GDP dissociation inhibitor IPR000406
Gene3D 71 248 178 G3DSA:2.70.50.30 none none IPR024792
PANTHER 44 249 206 PTHR10980 "Reactome:REACT_11044";signature_desc=RHO GDP-DISSOCIATION INHIBITOR none IPR000406
PANTHER 44 249 206 PTHR10980:SF3 none none none

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting