Protein : Qrob_P0255420.2 Q. robur
Protein Identifier  ? Qrob_P0255420.2 Organism . Name  Quercus robur
Score  30.2 Score Type  egn
Protein Description  (M=2) K07447 - putative holliday junction resolvase [EC:3.1.-.-] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 223  
Kegg Orthology  K07447
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0006310 DNA recombination Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
GO:0006139 nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0031564 transcription antitermination Regulation of transcription by a mechanism that allows RNA polymerase to continue transcription beyond a termination site.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103964537 24 221 + 198 Gaps:20 90.83 240 65.60 7e-97 uncharacterized LOC103964537
blastp_kegg lcl|pmum:103331706 21 221 + 201 Gaps:20 90.57 244 65.61 7e-96 uncharacterized LOC103331706
blastp_kegg lcl|fve:101305895 13 221 + 209 Gaps:22 95.45 242 64.07 2e-95 putative Holliday junction resolvase-like
blastp_kegg lcl|mdm:103425843 9 221 + 213 Gaps:21 97.50 240 62.39 6e-95 uncharacterized LOC103425843
blastp_kegg lcl|mdm:103417005 9 221 + 213 Gaps:21 97.50 240 62.39 6e-95 uncharacterized LOC103417005
blastp_kegg lcl|pper:PRUPE_ppa010962mg 28 221 + 194 Gaps:25 95.63 229 66.21 3e-94 hypothetical protein
blastp_kegg lcl|gmx:100810356 3 219 + 217 Gaps:37 99.12 226 66.96 7e-93 uncharacterized LOC100810356
blastp_kegg lcl|vvi:100247884 27 222 + 196 Gaps:25 93.01 229 67.61 5e-92 putative Holliday junction resolvase-like
blastp_kegg lcl|pvu:PHAVU_010G071600g 13 219 + 207 Gaps:23 95.73 234 62.50 2e-90 hypothetical protein
blastp_kegg lcl|cam:101500569 16 219 + 204 Gaps:29 92.34 235 64.98 2e-90 putative Holliday junction resolvase-like
blastp_pdb 1ovq_A 102 184 + 83 Gaps:3 57.97 138 38.75 1e-09 mol:protein length:138 Hypothetical protein yqgF
blastp_pdb 1nmn_B 102 184 + 83 Gaps:3 57.97 138 38.75 1e-09 mol:protein length:138 Hypothetical protein yqgF
blastp_pdb 1nmn_A 102 184 + 83 Gaps:3 57.97 138 38.75 1e-09 mol:protein length:138 Hypothetical protein yqgF
blastp_pdb 1nu0_B 102 184 + 83 Gaps:3 57.97 138 37.50 1e-08 mol:protein length:138 Hypothetical protein yqgF
blastp_pdb 1nu0_A 102 184 + 83 Gaps:3 57.97 138 37.50 1e-08 mol:protein length:138 Hypothetical protein yqgF
blastp_uniprot_sprot sp|Q8EBZ8|RUVX_SHEON 102 184 + 83 Gaps:3 56.74 141 33.75 2e-09 Putative Holliday junction resolvase OS Shewanella oneidensis (strain MR-1) GN SO_3347 PE 3 SV 1
blastp_uniprot_sprot sp|B7NI12|RUVX_ECO7I 102 184 + 83 Gaps:3 57.97 138 38.75 4e-09 Putative Holliday junction resolvase OS Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN yqgF PE 3 SV 1
blastp_uniprot_sprot sp|Q3YXS2|RUVX_SHISS 102 184 + 83 Gaps:3 57.97 138 38.75 4e-09 Putative Holliday junction resolvase OS Shigella sonnei (strain Ss046) GN yqgF PE 3 SV 1
blastp_uniprot_sprot sp|Q83JS4|RUVX_SHIFL 102 184 + 83 Gaps:3 57.97 138 38.75 4e-09 Putative Holliday junction resolvase OS Shigella flexneri GN yqgF PE 3 SV 1
blastp_uniprot_sprot sp|Q0T0U3|RUVX_SHIF8 102 184 + 83 Gaps:3 57.97 138 38.75 4e-09 Putative Holliday junction resolvase OS Shigella flexneri serotype 5b (strain 8401) GN yqgF PE 3 SV 1
blastp_uniprot_sprot sp|Q31WL1|RUVX_SHIBS 102 184 + 83 Gaps:3 57.97 138 38.75 4e-09 Putative Holliday junction resolvase OS Shigella boydii serotype 4 (strain Sb227) GN yqgF PE 3 SV 1
blastp_uniprot_sprot sp|B2U0W9|RUVX_SHIB3 102 184 + 83 Gaps:3 57.97 138 38.75 4e-09 Putative Holliday junction resolvase OS Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN yqgF PE 3 SV 1
blastp_uniprot_sprot sp|B7LPR6|RUVX_ESCF3 102 184 + 83 Gaps:3 57.97 138 38.75 4e-09 Putative Holliday junction resolvase OS Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN yqgF PE 3 SV 1
blastp_uniprot_sprot sp|B1LDF8|RUVX_ECOSM 102 184 + 83 Gaps:3 57.97 138 38.75 4e-09 Putative Holliday junction resolvase OS Escherichia coli (strain SMS-3-5 / SECEC) GN yqgF PE 3 SV 1
blastp_uniprot_sprot sp|B7N7K2|RUVX_ECOLU 102 184 + 83 Gaps:3 57.97 138 38.75 4e-09 Putative Holliday junction resolvase OS Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN yqgF PE 3 SV 1
rpsblast_cdd gnl|CDD|202719 76 184 + 109 Gaps:28 96.27 134 33.33 2e-20 pfam03652 UPF0081 Uncharacterized protein family (UPF0081).
rpsblast_cdd gnl|CDD|178870 76 184 + 109 Gaps:28 93.48 138 30.23 3e-16 PRK00109 PRK00109 Holliday junction resolvase-like protein Reviewed.
rpsblast_cdd gnl|CDD|31158 76 185 + 110 Gaps:29 92.91 141 31.30 6e-16 COG0816 COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|129352 76 184 + 109 Gaps:28 99.23 130 27.91 1e-11 TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family which exhibits an RNAse H fold in crystal structure has been proposed as a putative Holliday junction resolvase an alternate to RuvC.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 74 185 112 SSF53098 none none IPR012337
TIGRFAM 100 184 85 TIGR00250 none RNAse_H_YqgF: putative transcription antitermination factor YqgF IPR005227
SMART 73 153 81 SM00732 none Likely ribonuclease with RNase H fold. IPR006641
Gene3D 100 186 87 G3DSA:3.30.420.140 none none IPR006641
Pfam 100 185 86 PF03652 none Uncharacterised protein family (UPF0081) IPR005227

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting