Protein : Qrob_P0250120.2 Q. robur
Protein Identifier  ? Qrob_P0250120.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) K12121 - phytochrome B Gene Prediction Quality  validated
Protein length 

Sequence

Length: 339  
Kegg Orthology  K12121
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0018298 protein-chromophore linkage The covalent or noncovalent attachment of a chromophore to a protein.
GO:0009584 detection of visible light The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0008s10470g 29 338 + 310 none 27.15 1142 88.71 0.0 POPTRDRAFT_832686 Phytochrome B family protein
blastp_kegg lcl|gmx:100799831 29 338 + 310 none 27.26 1137 88.39 0.0 PHYB phytochrome B-like
blastp_kegg lcl|tcc:TCM_021372 29 338 + 310 none 27.24 1138 88.39 0.0 Phytochrome B isoform 1
blastp_kegg lcl|pmum:103323170 30 338 + 309 none 27.61 1119 88.35 0.0 phytochrome B
blastp_kegg lcl|pper:PRUPE_ppa000510mg 30 338 + 309 none 27.61 1119 88.35 0.0 hypothetical protein
blastp_kegg lcl|fve:101306611 29 338 + 310 none 27.29 1136 87.10 0.0 phytochrome B-like
blastp_kegg lcl|cmo:103483895 29 338 + 310 none 27.39 1132 88.39 0.0 phytochrome B
blastp_kegg lcl|pvu:PHAVU_006G118200g 29 338 + 310 none 27.39 1132 87.10 0.0 hypothetical protein
blastp_kegg lcl|pxb:103961302 29 338 + 310 none 27.68 1120 88.06 0.0 phytochrome B-like
blastp_kegg lcl|mtr:MTR_2g034040 29 338 + 310 Gaps:4 26.21 1198 86.94 0.0 Phytochrome b1
blastp_pdb 2vea_A 28 335 + 308 Gaps:18 57.31 520 33.56 4e-46 mol:protein length:520 PHYTOCHROME-LIKE PROTEIN CPH1
blastp_pdb 3zq5_A 28 335 + 308 Gaps:18 57.31 520 33.22 1e-45 mol:protein length:520 PHYTOCHROME-LIKE PROTEIN CPH1
blastp_pdb 3ibr_B 29 331 + 303 Gaps:64 58.02 505 32.08 2e-33 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3ibr_A 29 331 + 303 Gaps:64 58.02 505 32.08 2e-33 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3g6o_B 29 331 + 303 Gaps:64 58.02 505 32.08 2e-33 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3g6o_A 29 331 + 303 Gaps:64 58.02 505 32.08 2e-33 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3nhq_H 29 331 + 303 Gaps:64 58.02 505 31.74 1e-32 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3nhq_G 29 331 + 303 Gaps:64 58.02 505 31.74 1e-32 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3nhq_F 29 331 + 303 Gaps:64 58.02 505 31.74 1e-32 mol:protein length:505 Bacteriophytochrome
blastp_pdb 3nhq_E 29 331 + 303 Gaps:64 58.02 505 31.74 1e-32 mol:protein length:505 Bacteriophytochrome
blastp_uniprot_sprot sp|P29130|PHYB_TOBAC 29 338 + 310 none 27.39 1132 87.42 0.0 Phytochrome B OS Nicotiana tabacum GN PHYB PE 2 SV 2
blastp_uniprot_sprot sp|P34094|PHYB_SOLTU 29 338 + 310 Gaps:1 27.52 1130 87.46 0.0 Phytochrome B OS Solanum tuberosum GN PHYB PE 3 SV 2
blastp_uniprot_sprot sp|Q9ZS62|PHYB1_SOLLC 29 338 + 310 Gaps:1 27.50 1131 87.14 0.0 Phytochrome B1 OS Solanum lycopersicum GN PHYB1 PE 2 SV 1
blastp_uniprot_sprot sp|P14713|PHYB_ARATH 29 338 + 310 Gaps:3 26.71 1172 84.66 0.0 Phytochrome B OS Arabidopsis thaliana GN PHYB PE 1 SV 1
blastp_uniprot_sprot sp|P42499|PHYB_SOYBN 29 333 + 305 none 26.38 1156 85.90 0.0 Phytochrome B OS Glycine max GN PHYB PE 3 SV 1
blastp_uniprot_sprot sp|P42497|PHYD_ARATH 29 338 + 310 Gaps:4 26.98 1164 83.12 0.0 Phytochrome D OS Arabidopsis thaliana GN PHYD PE 1 SV 2
blastp_uniprot_sprot sp|P93527|PHYB_SORBI 29 338 + 310 Gaps:4 26.66 1178 81.53 1e-179 Phytochrome B OS Sorghum bicolor GN PHYB PE 3 SV 2
blastp_uniprot_sprot sp|Q10MG9|PHYB_ORYSJ 29 338 + 310 Gaps:5 26.90 1171 80.00 2e-176 Phytochrome B OS Oryza sativa subsp. japonica GN PHYB PE 2 SV 1
blastp_uniprot_sprot sp|A2XFW2|PHYB_ORYSI 29 338 + 310 Gaps:5 26.90 1171 80.00 2e-176 Phytochrome B OS Oryza sativa subsp. indica GN PHYB PE 3 SV 2
blastp_uniprot_sprot sp|Q41046|PHY_PINSY 29 338 + 310 Gaps:1 27.50 1131 78.78 1e-172 Phytochrome OS Pinus sylvestris PE 2 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 29 189 161 PS50046 none Phytochrome chromophore attachment site domain profile. IPR016132
SMART 20 209 190 SM00065 none Domain present in phytochromes and cGMP-specific phosphodiesterases. IPR003018
PANTHER 55 338 284 PTHR24423:SF414 none none none
SUPERFAMILY 207 336 130 SSF55781 none none IPR029016
SUPERFAMILY 28 196 169 SSF55781 none none IPR029016
PANTHER 55 338 284 PTHR24423 none none none
Pfam 28 199 172 PF01590 none GAF domain IPR003018
PRINTS 36 55 20 PR01033 none Phytochrome signature IPR001294
PRINTS 229 249 21 PR01033 none Phytochrome signature IPR001294
PRINTS 314 333 20 PR01033 none Phytochrome signature IPR001294
PRINTS 121 142 22 PR01033 none Phytochrome signature IPR001294
Gene3D 27 100 74 G3DSA:3.30.450.40 none none IPR029016
Pfam 211 337 127 PF00360 none Phytochrome region IPR013515

0 Localization

0 Qtllist

0 Targeting