Protein : Qrob_P0248820.2 Q. robur
Protein Identifier  ? Qrob_P0248820.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K09550 - prefoldin subunit 4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 97  
Kegg Orthology  K09550
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006457 protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
GO:0051082 unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
GO:0016272 prefoldin complex A multisubunit chaperone that is capable of delivering unfolded proteins to cytosolic chaperonin, which it acts as a cofactor for. In humans, the complex is a heterohexamer of two PFD-alpha and four PFD-beta type subunits. In Saccharomyces cerevisiae, it also acts in the nucleus to regulate the rate of elongation by RNA polymerase II via a direct effect on histone dynamics.

19 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0005s05620g 11 96 + 86 none 68.25 126 86.05 5e-43 prefoldin family protein
blastp_kegg lcl|pvu:PHAVU_007G187900g 11 96 + 86 none 68.25 126 87.21 6e-43 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0484410 11 96 + 86 none 68.25 126 83.72 6e-43 Prefoldin subunit putative
blastp_kegg lcl|pop:POPTR_0013s03940g 11 96 + 86 none 68.25 126 83.72 4e-42 POPTRDRAFT_729858 prefoldin family protein
blastp_kegg lcl|gmx:100306048 11 96 + 86 none 68.25 126 82.56 2e-41 uncharacterized LOC100306048
blastp_kegg lcl|cam:101496747 11 96 + 86 none 68.25 126 83.72 3e-41 probable prefoldin subunit 4-like
blastp_kegg lcl|pxb:103954389 11 96 + 86 none 68.25 126 82.56 3e-41 probable prefoldin subunit 4
blastp_kegg lcl|fve:101307508 11 96 + 86 none 68.25 126 83.72 6e-41 probable prefoldin subunit 4-like
blastp_kegg lcl|csv:101205424 11 96 + 86 none 68.25 126 80.23 8e-41 probable prefoldin subunit 4-like
blastp_kegg lcl|mdm:103434174 11 96 + 86 none 68.25 126 82.56 8e-41 probable prefoldin subunit 4
blastp_uniprot_sprot sp|Q9M4B5|PFD4_ARATH 11 96 + 86 none 66.67 129 73.26 5e-37 Probable prefoldin subunit 4 OS Arabidopsis thaliana GN AIP3 PE 1 SV 3
blastp_uniprot_sprot sp|Q9M4C4|PFD4_AVEFA 11 96 + 86 none 68.25 126 79.07 2e-33 Probable prefoldin subunit 4 OS Avena fatua GN VIP3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9NQP4|PFD4_HUMAN 14 96 + 83 Gaps:2 63.43 134 37.65 3e-10 Prefoldin subunit 4 OS Homo sapiens GN PFDN4 PE 1 SV 1
blastp_uniprot_sprot sp|Q2TBR6|PFD4_BOVIN 14 96 + 83 Gaps:2 63.43 134 37.65 6e-10 Prefoldin subunit 4 OS Bos taurus GN PFDN4 PE 2 SV 1
blastp_uniprot_sprot sp|P53900|PFD4_YEAST 2 94 + 93 Gaps:1 72.87 129 35.11 7e-10 Prefoldin subunit 4 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN GIM3 PE 1 SV 1
blastp_uniprot_sprot sp|A8X0Z1|PFD4_CAEBR 14 94 + 81 Gaps:3 66.67 126 38.10 1e-09 Probable prefoldin subunit 4 OS Caenorhabditis briggsae GN pfd-4 PE 3 SV 1
blastp_uniprot_sprot sp|Q17435|PFD4_CAEEL 14 94 + 81 Gaps:3 66.67 126 38.10 2e-09 Probable prefoldin subunit 4 OS Caenorhabditis elegans GN pfd-4 PE 2 SV 1
blastp_uniprot_sprot sp|Q54TB7|PFD4_DICDI 8 95 + 88 Gaps:1 67.42 132 33.71 8e-08 Probable prefoldin subunit 4 OS Dictyostelium discoideum GN pfdn4 PE 3 SV 1
rpsblast_kog gnl|CDD|36971 9 96 + 88 Gaps:2 68.70 131 48.89 3e-15 KOG1760 KOG1760 KOG1760 Molecular chaperone Prefoldin subunit 4 [Posttranslational modification protein turnover chaperones].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 14 81 68 G3DSA:1.10.287.370 none none IPR009053
PANTHER 9 96 88 PTHR21100:SF9 none none IPR016661
PANTHER 9 96 88 PTHR21100 none none none
SUPERFAMILY 15 83 69 SSF46579 none none IPR009053
Coils 48 83 36 Coil none none none
Pfam 11 89 79 PF01920 none Prefoldin subunit IPR002777

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting