Protein : Qrob_P0246680.2 Q. robur
Protein Identifier  ? Qrob_P0246680.2 Organism . Name  Quercus robur
Score  72.1 Score Type  egn
Protein Description  (M=1) K02608 - origin recognition complex subunit 6 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 231  
Kegg Orthology  K02608
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006260 DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO:0005664 nuclear origin of replication recognition complex A multisubunit complex that is located at the replication origins of a chromosome in the nucleus.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa014584mg 1 228 + 228 Gaps:1 79.79 287 86.03 5e-140 hypothetical protein
blastp_kegg lcl|pmum:103321588 1 228 + 228 Gaps:1 79.79 287 86.03 7e-140 origin recognition complex subunit 6
blastp_kegg lcl|pxb:103950828 1 228 + 228 Gaps:1 85.13 269 85.15 2e-137 origin recognition complex subunit 6
blastp_kegg lcl|mdm:103451820 1 228 + 228 Gaps:1 79.24 289 84.28 2e-136 origin recognition complex subunit 6
blastp_kegg lcl|rcu:RCOM_0836080 1 229 + 229 Gaps:1 80.14 287 81.30 2e-133 Origin recognition complex subunit putative
blastp_kegg lcl|fve:101306523 1 228 + 228 Gaps:1 79.51 288 81.66 1e-132 origin recognition complex subunit 6-like
blastp_kegg lcl|tcc:TCM_011759 1 229 + 229 Gaps:2 80.49 287 80.52 2e-131 Origin recognition complex protein 6 isoform 1
blastp_kegg lcl|vvi:100248173 1 229 + 229 Gaps:2 80.21 288 80.09 8e-131 origin recognition complex subunit 6-like
blastp_kegg lcl|cic:CICLE_v10032310mg 1 229 + 229 Gaps:1 80.42 286 78.26 9e-128 hypothetical protein
blastp_kegg lcl|cit:102619526 1 229 + 229 Gaps:1 80.42 286 77.83 1e-126 origin recognition complex subunit 6-like
blastp_pdb 3m03_C 92 188 + 97 Gaps:4 97.89 95 30.11 3e-09 mol:protein length:95 Origin recognition complex subunit 6
blastp_pdb 3m03_B 92 188 + 97 Gaps:4 97.89 95 30.11 3e-09 mol:protein length:95 Origin recognition complex subunit 6
blastp_pdb 3m03_A 92 188 + 97 Gaps:4 97.89 95 30.11 3e-09 mol:protein length:95 Origin recognition complex subunit 6
blastp_uniprot_sprot sp|Q9ZVH3|ORC6_ARATH 1 225 + 225 Gaps:1 79.58 284 73.01 2e-114 Origin recognition complex subunit 6 OS Arabidopsis thaliana GN ORC6 PE 1 SV 2
blastp_uniprot_sprot sp|Q9Y5N6|ORC6_HUMAN 6 200 + 195 Gaps:10 73.41 252 30.81 1e-19 Origin recognition complex subunit 6 OS Homo sapiens GN ORC6 PE 1 SV 1
blastp_uniprot_sprot sp|Q9WUJ8|ORC6_MOUSE 6 168 + 163 Gaps:5 60.31 262 33.54 8e-19 Origin recognition complex subunit 6 OS Mus musculus GN Orc6 PE 1 SV 1
blastp_uniprot_sprot sp|Q2HJF3|ORC6_BOVIN 6 218 + 213 Gaps:18 86.90 252 28.77 5e-18 Origin recognition complex subunit 6 OS Bos taurus GN ORC6 PE 2 SV 1
rpsblast_cdd gnl|CDD|211425 94 188 + 95 Gaps:3 97.87 94 47.83 2e-21 cd11583 Orc6_mid Middle domain of the origin recognition complex subunit 6. Orc6 is a subunit of the origin recognition complex in eukaryotes and it may be involved in binding to DNA. This model describes the central or middle domain of Orc6 whose structure resembles that of TFIIB a DNA-binding transcription factor. Orc6 appears to form distinct complexes with DNA and a putative DNA-binding site has been identified.
rpsblast_cdd gnl|CDD|191278 3 91 + 89 Gaps:1 29.63 297 29.55 2e-11 pfam05460 ORC6 Origin recognition complex subunit 6 (ORC6). This family consists of several eukaryotic origin recognition complex subunit 6 (ORC6) proteins. Despite differences in their structure and sequences among eukaryotic replicators ORC is a conserved feature of replication initiation in all eukaryotes. ORC-related genes have been identified in organisms ranging from S. pombe to plants to humans. All DNA replication initiation is driven by a single conserved eukaryotic initiator complex termed he origin recognition complex (ORC). The ORC is a six protein complex. The function of ORC is reviewed in.
rpsblast_kog gnl|CDD|39757 1 221 + 221 Gaps:11 85.50 262 60.27 2e-57 KOG4557 KOG4557 KOG4557 Origin recognition complex subunit 6 [Replication recombination and repair].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 3 91 89 PF05460 none Origin recognition complex subunit 6 (ORC6) IPR008721
PANTHER 1 219 219 PTHR13394:SF0 none none none
ProDom 6 148 143 PD315657 none SUBUNIT RECOGNITION ORIGIN COMPLEX 6-LIKE DNA-BINDING COMPLEX DNA NUCLEAR REPLICATION IPR020529
PANTHER 1 219 219 PTHR13394 none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5

0 Targeting