Protein : Qrob_P0246520.2 Q. robur
Protein Identifier  ? Qrob_P0246520.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR22870:SF90 - REGULATOR OF CHROMOSOME CONDENSATION (RCC1) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 915  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0046872 metal ion binding Interacting selectively and non-covalently with any metal ion.
GO:0005543 phospholipid binding Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester.
GO:0005938 cell cortex The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins.
GO:0032065 cortical protein anchoring A process in which a protein or protein complex is maintained in a specific location in the cell cortex.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa020628mg 1 912 + 912 Gaps:4 88.46 1031 74.67 0.0 hypothetical protein
blastp_kegg lcl|pmum:103321597 1 912 + 912 Gaps:4 88.46 1031 74.45 0.0 uncharacterized LOC103321597
blastp_kegg lcl|vvi:100250008 1 913 + 913 Gaps:23 88.25 1047 72.08 0.0 uncharacterized LOC100250008
blastp_kegg lcl|tcc:TCM_011750 1 906 + 906 Gaps:5 88.36 1022 71.54 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain putative isoform 1
blastp_kegg lcl|mdm:103402905 1 912 + 912 Gaps:7 88.49 1034 71.04 0.0 uncharacterized LOC103402905
blastp_kegg lcl|mdm:103451839 1 912 + 912 Gaps:17 88.54 1038 71.49 0.0 E3 ubiquitin-protein ligase HERC2-like
blastp_kegg lcl|pxb:103950839 1 912 + 912 Gaps:8 88.48 1033 71.23 0.0 uncharacterized LOC103950839
blastp_kegg lcl|fve:101307114 1 912 + 912 Gaps:9 90.22 1012 68.67 0.0 uncharacterized protein LOC101307114
blastp_kegg lcl|cmo:103485768 1 912 + 912 Gaps:51 87.88 982 72.65 0.0 uncharacterized LOC103485768
blastp_kegg lcl|csv:101222790 1 912 + 912 Gaps:51 87.88 982 72.07 0.0 uncharacterized LOC101222790
blastp_pdb 4dnu_A 245 642 + 398 Gaps:100 97.58 372 59.50 2e-54 mol:protein length:372 AT5g63860/MGI19_6
blastp_pdb 4d9s_B 245 642 + 398 Gaps:100 89.41 406 59.50 4e-54 mol:protein length:406 UVB-resistance protein UVR8
blastp_pdb 4d9s_A 245 642 + 398 Gaps:100 89.41 406 59.50 4e-54 mol:protein length:406 UVB-resistance protein UVR8
blastp_pdb 4dnv_D 245 642 + 398 Gaps:100 98.11 370 59.50 4e-54 mol:protein length:370 AT5g63860/MGI19_6
blastp_pdb 4dnv_C 245 642 + 398 Gaps:100 98.11 370 59.50 4e-54 mol:protein length:370 AT5g63860/MGI19_6
blastp_pdb 4dnv_B 245 642 + 398 Gaps:100 98.11 370 59.50 4e-54 mol:protein length:370 AT5g63860/MGI19_6
blastp_pdb 4dnv_A 245 642 + 398 Gaps:100 98.11 370 59.50 4e-54 mol:protein length:370 AT5g63860/MGI19_6
blastp_pdb 4dnw_B 245 642 + 398 Gaps:100 97.06 374 59.50 6e-54 mol:protein length:374 AT5g63860/MGI19_6
blastp_pdb 4dnw_A 245 642 + 398 Gaps:100 97.06 374 59.50 6e-54 mol:protein length:374 AT5g63860/MGI19_6
blastp_pdb 3kci_A 242 634 + 393 Gaps:122 94.86 389 58.54 7e-44 mol:protein length:389 Probable E3 ubiquitin-protein ligase HERC2
blastp_uniprot_sprot sp|Q9FN03|UVR8_ARATH 245 642 + 398 Gaps:100 82.50 440 59.50 2e-53 Ultraviolet-B receptor UVR8 OS Arabidopsis thaliana GN UVR8 PE 1 SV 1
blastp_uniprot_sprot sp|O95714|HERC2_HUMAN 228 661 + 434 Gaps:346 23.11 4834 53.36 1e-50 E3 ubiquitin-protein ligase HERC2 OS Homo sapiens GN HERC2 PE 1 SV 2
blastp_uniprot_sprot sp|Q4U2R1|HERC2_MOUSE 228 661 + 434 Gaps:320 23.18 4836 52.01 1e-50 E3 ubiquitin-protein ligase HERC2 OS Mus musculus GN Herc2 PE 1 SV 3
blastp_uniprot_sprot sp|Q15751|HERC1_HUMAN 245 651 + 407 Gaps:221 14.98 4861 50.55 1e-49 Probable E3 ubiquitin-protein ligase HERC1 OS Homo sapiens GN HERC1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9VR91|HERC2_DROME 240 650 + 411 Gaps:292 21.11 4912 55.64 2e-45 Probable E3 ubiquitin-protein ligase HERC2 OS Drosophila melanogaster GN HERC2 PE 1 SV 3
blastp_uniprot_sprot sp|Q6PAV2|HERC4_MOUSE 242 634 + 393 Gaps:115 32.45 1057 58.31 3e-43 Probable E3 ubiquitin-protein ligase HERC4 OS Mus musculus GN Herc4 PE 2 SV 2
blastp_uniprot_sprot sp|Q5GLZ8|HERC4_HUMAN 291 634 + 344 Gaps:83 32.26 1057 51.91 4e-43 Probable E3 ubiquitin-protein ligase HERC4 OS Homo sapiens GN HERC4 PE 1 SV 1
blastp_uniprot_sprot sp|Q5PQN1|HERC4_RAT 242 659 + 418 Gaps:124 37.09 1057 54.08 1e-42 Probable E3 ubiquitin-protein ligase HERC4 OS Rattus norvegicus GN Herc4 PE 2 SV 1
blastp_uniprot_sprot sp|Q15034|HERC3_HUMAN 246 635 + 390 Gaps:93 36.00 1050 47.09 8e-41 Probable E3 ubiquitin-protein ligase HERC3 OS Homo sapiens GN HERC3 PE 1 SV 1
blastp_uniprot_sprot sp|F2Z461|HERC6_MOUSE 246 634 + 389 Gaps:111 30.21 1003 55.78 8e-37 E3 ISG15--protein ligase Herc6 OS Mus musculus GN Herc6 PE 2 SV 1

40 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 415 463 49 PF00415 none Regulator of chromosome condensation (RCC1) repeat IPR000408
Pfam 481 530 50 PF00415 none Regulator of chromosome condensation (RCC1) repeat IPR000408
Pfam 359 410 52 PF00415 none Regulator of chromosome condensation (RCC1) repeat IPR000408
Pfam 308 356 49 PF00415 none Regulator of chromosome condensation (RCC1) repeat IPR000408
Pfam 533 582 50 PF00415 none Regulator of chromosome condensation (RCC1) repeat IPR000408
Pfam 587 634 48 PF00415 none Regulator of chromosome condensation (RCC1) repeat IPR000408
ProSiteProfiles 534 585 52 PS50012 none Regulator of chromosome condensation (RCC1) repeat profile. IPR000408
Coils 842 905 64 Coil none none none
Gene3D 640 707 68 G3DSA:3.30.40.10 none none IPR013083
PANTHER 479 906 428 PTHR22870 none none none
Gene3D 244 638 395 G3DSA:2.130.10.30 none none IPR009091
ProSiteProfiles 586 637 52 PS50012 none Regulator of chromosome condensation (RCC1) repeat profile. IPR000408
Pfam 14 122 109 PF12814 none Meiotic cell cortex C-terminal pleckstrin homology IPR024774
ProSitePatterns 453 463 11 PS00626 none Regulator of chromosome condensation (RCC1) signature 2. IPR000408
Pfam 838 905 68 PF15035 none Ciliary rootlet component, centrosome cohesion none
ProSiteProfiles 415 466 52 PS50012 none Regulator of chromosome condensation (RCC1) repeat profile. IPR000408
Pfam 886 904 19 PF13713 none Transcription factor BRX N-terminal domain IPR027988
ProSiteProfiles 482 533 52 PS50012 none Regulator of chromosome condensation (RCC1) repeat profile. IPR000408
SUPERFAMILY 244 638 395 SSF50985 none none IPR009091
ProSiteProfiles 20 122 103 PS50003 none PH domain profile. IPR001849
SUPERFAMILY 14 121 108 SSF50729 none none none
SMART 636 705 70 SM00064 none Protein present in Fab1, YOTB, Vac1, and EEA1 IPR000306
ProSiteProfiles 360 414 55 PS50012 none Regulator of chromosome condensation (RCC1) repeat profile. IPR000408
SUPERFAMILY 640 710 71 SSF57903 none none IPR011011
PANTHER 479 906 428 PTHR22870:SF90 none none none
PANTHER 1 463 463 PTHR22870:SF90 none none none
PANTHER 1 463 463 PTHR22870 none none none
ProSiteProfiles 244 307 64 PS50012 none Regulator of chromosome condensation (RCC1) repeat profile. IPR000408
ProSiteProfiles 308 359 52 PS50012 none Regulator of chromosome condensation (RCC1) repeat profile. IPR000408
Gene3D 11 124 114 G3DSA:2.30.29.30 none none IPR011993

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5

0 Targeting