Protein : Qrob_P0243600.2 Q. robur
Protein Identifier  ? Qrob_P0243600.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) K03043 - DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 772  
Kegg Orthology  K03043
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0032549 ribonucleoside binding Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:ThcaC_p013 1 768 + 768 Gaps:3 71.50 1070 92.94 0.0 rpoB RNA polymerase beta subunit
blastp_kegg lcl|fve:10251497 1 768 + 768 Gaps:3 71.50 1070 92.68 0.0 rpoB FvH4_C0019 RNA polymerase beta subunit
blastp_kegg lcl|pmum:18668009 1 768 + 768 Gaps:3 71.50 1070 92.55 0.0 rpoB CP95_p075 RNA polymerase beta subunit
blastp_kegg lcl|pper:PrpeC_p013 1 768 + 768 Gaps:3 71.50 1070 92.42 0.0 rpoB RNA polymerase beta subunit
blastp_kegg lcl|sot:4099994 1 768 + 768 Gaps:3 71.50 1070 91.50 0.0 rpoB SotuCp013 RNA polymerase beta chain
blastp_kegg lcl|sly:3950478 1 768 + 768 Gaps:3 71.50 1070 91.50 0.0 rpoB LyesC2p077 RNA polymerase beta subunit
blastp_kegg lcl|csv:3429302 1 768 + 768 Gaps:3 71.43 1071 91.37 0.0 rpoB CsCp018 RNA polymerase beta chain
blastp_kegg lcl|vvi:4025099 1 768 + 768 Gaps:3 71.50 1070 92.42 0.0 rpoB ViviCp013 RNA polymerase beta chain
blastp_kegg lcl|rcu:RCOM_ORF00021 1 768 + 768 Gaps:3 71.50 1070 91.11 0.0 rpoB RNA polymerase beta subunit
blastp_kegg lcl|cam:6797471 1 768 + 768 Gaps:3 71.50 1070 90.07 0.0 rpoB CiarC_p019 RNA polymerase beta subunit
blastp_pdb 3eql_M 1 768 + 768 Gaps:34 68.81 1119 40.13 1e-170 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3eql_C 1 768 + 768 Gaps:34 68.81 1119 40.13 1e-170 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3dxj_M 1 768 + 768 Gaps:34 68.81 1119 40.13 1e-170 mol:protein length:1119 BACTRIAL RNA POLYMERASE BETA SUBUNIT CHAIN C
blastp_pdb 3dxj_C 1 768 + 768 Gaps:34 68.81 1119 40.13 1e-170 mol:protein length:1119 BACTRIAL RNA POLYMERASE BETA SUBUNIT CHAIN C
blastp_pdb 3aoi_M 1 768 + 768 Gaps:34 68.81 1119 40.13 1e-170 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3aoi_H 1 768 + 768 Gaps:34 68.81 1119 40.13 1e-170 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3aoi_C 1 768 + 768 Gaps:34 68.81 1119 40.13 1e-170 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3aoh_M 1 768 + 768 Gaps:34 68.81 1119 40.13 1e-170 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3aoh_H 1 768 + 768 Gaps:34 68.81 1119 40.13 1e-170 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3aoh_C 1 768 + 768 Gaps:34 68.81 1119 40.13 1e-170 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_uniprot_sprot sp|Q2L8Z9|RPOB_GOSHI 1 768 + 768 Gaps:3 71.50 1070 92.68 0.0 DNA-directed RNA polymerase subunit beta OS Gossypium hirsutum GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|A0ZZ27|RPOB_GOSBA 1 768 + 768 Gaps:3 71.50 1070 92.68 0.0 DNA-directed RNA polymerase subunit beta OS Gossypium barbadense GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q0G9M7|RPOB_LIRTU 1 768 + 768 Gaps:3 71.50 1070 92.16 0.0 DNA-directed RNA polymerase subunit beta OS Liriodendron tulipifera GN rpoB PE 3 SV 2
blastp_uniprot_sprot sp|Q8S8X9|RPOB_ATRBE 1 768 + 768 Gaps:3 71.50 1070 92.16 0.0 DNA-directed RNA polymerase subunit beta OS Atropa belladonna GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|P06271|RPOB_TOBAC 1 768 + 768 Gaps:3 71.50 1070 92.03 0.0 DNA-directed RNA polymerase subunit beta OS Nicotiana tabacum GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q3C1G7|RPOB_NICSY 1 768 + 768 Gaps:3 71.50 1070 92.03 0.0 DNA-directed RNA polymerase subunit beta OS Nicotiana sylvestris GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q68S14|RPOB_PANGI 1 768 + 768 Gaps:3 71.43 1071 91.76 0.0 DNA-directed RNA polymerase subunit beta OS Panax ginseng GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q33C46|RPOB_NICTO 1 768 + 768 Gaps:3 71.50 1070 91.90 0.0 DNA-directed RNA polymerase subunit beta OS Nicotiana tomentosiformis GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|A6MM28|RPOB_BUXMI 1 768 + 768 Gaps:3 71.50 1070 92.16 0.0 DNA-directed RNA polymerase subunit beta OS Buxus microphylla GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q49L06|RPOB_EUCGG 1 768 + 768 Gaps:5 71.55 1072 92.05 0.0 DNA-directed RNA polymerase subunit beta OS Eucalyptus globulus subsp. globulus GN rpoB PE 3 SV 1

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 579 710 132 G3DSA:2.40.50.150 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR014724
Gene3D 472 545 74 G3DSA:2.40.50.100 none none none
ProSitePatterns 714 726 13 PS01166 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerases beta chain signature. IPR007121
Gene3D 24 199 176 G3DSA:3.90.1110.10 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR007642
Pfam 270 338 69 PF04565 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 3 IPR007645
Gene3D 200 349 150 G3DSA:3.90.1100.10 none none none
Gene3D 416 470 55 G3DSA:3.90.1100.10 none none none
Gene3D 1 22 22 G3DSA:3.90.1100.10 none none none
Pfam 5 265 261 PF04563 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase beta subunit IPR007644
Pfam 420 768 349 PF00562 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 6 IPR007120
SUPERFAMILY 1 768 768 SSF64484 none none none
PANTHER 1 463 463 PTHR20856 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788";signature_desc=DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 none IPR015712
PANTHER 514 768 255 PTHR20856 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788";signature_desc=DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 none IPR015712
Pfam 23 209 187 PF04561 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 2 IPR007642
Gene3D 546 572 27 G3DSA:2.40.270.10 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR007120
Gene3D 711 768 58 G3DSA:2.40.270.10 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR007120
PANTHER 1 463 463 PTHR20856:SF20 none none none
PANTHER 514 768 255 PTHR20856:SF20 none none none

0 Localization

0 Qtllist

0 Targeting