Protein : Qrob_P0243590.2 Q. robur
Protein Identifier  ? Qrob_P0243590.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) KOG0261//KOG0262 - RNA polymerase III large subunit [Transcription]. // RNA polymerase I large subunit [Transcription]. Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 289  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101232569 1 174 + 174 Gaps:41 64.11 326 68.90 2e-88 DNA-directed RNA polymerase subunit beta''-like
blastp_kegg lcl|aly:ARALYDRAFT_893972 1 259 + 259 Gaps:41 22.12 1379 78.03 3e-83 RNA polymerase beta subunit-2
blastp_kegg lcl|ath:ArthCp012 1 259 + 259 Gaps:41 22.17 1376 78.03 3e-83 rpoC2 RNA polymerase beta'' chain
blastp_kegg lcl|pper:PrpeC_p011 1 259 + 259 Gaps:41 23.17 1368 75.39 4e-83 rpoC2 RNA polymerase beta' subunit
blastp_kegg lcl|pmum:18668007 1 259 + 259 Gaps:41 23.17 1368 75.39 4e-83 rpoC2 CP95_p077 RNA polymerase beta' subunit
blastp_kegg lcl|atr:s00390p00012910 1 259 + 259 Gaps:41 18.29 1733 74.45 8e-83 AMTR_s00390p00012910 hypothetical protein
blastp_kegg lcl|tcc:ThcaC_p011 1 259 + 259 Gaps:41 22.79 1391 75.71 3e-82 rpoC2 RNA polymerase beta' subunit
blastp_kegg lcl|fve:10251495 1 259 + 259 Gaps:41 22.86 1387 74.76 3e-82 rpoC2 FvH4_C0017 RNA polymerase beta subunit
blastp_kegg lcl|mtr:MetrCp056 1 259 + 259 Gaps:41 22.27 1374 76.14 9e-82 rpoC2 RNA polymerase beta'' subunit
blastp_kegg lcl|mtr:MTR_4g051120 1 267 + 267 Gaps:45 23.17 1368 74.45 9e-82 DNA-directed RNA polymerase subunit beta
blastp_pdb 1ynn_J 1 257 + 257 Gaps:54 20.87 1524 36.16 5e-35 mol:protein length:1524 DNA-directed RNA polymerase beta' chain
blastp_pdb 1ynn_D 1 257 + 257 Gaps:54 20.87 1524 36.16 5e-35 mol:protein length:1524 DNA-directed RNA polymerase beta' chain
blastp_pdb 1ynj_J 1 257 + 257 Gaps:54 20.87 1524 36.16 5e-35 mol:protein length:1524 DNA-directed RNA polymerase beta' chain
blastp_pdb 1ynj_D 1 257 + 257 Gaps:54 20.87 1524 36.16 5e-35 mol:protein length:1524 DNA-directed RNA polymerase beta' chain
blastp_pdb 1l9z_D 1 257 + 257 Gaps:54 20.87 1524 36.16 5e-35 mol:protein length:1524 RNA POLYMERASE BETA-PRIME SUBUNIT
blastp_pdb 1l9u_M 1 257 + 257 Gaps:54 20.87 1524 36.16 5e-35 mol:protein length:1524 RNA POLYMERASE BETA-PRIME SUBUNIT
blastp_pdb 1l9u_D 1 257 + 257 Gaps:54 20.87 1524 36.16 5e-35 mol:protein length:1524 RNA POLYMERASE BETA-PRIME SUBUNIT
blastp_pdb 2gho_D 1 257 + 257 Gaps:54 25.79 1233 36.16 6e-35 mol:protein length:1233 DNA-directed RNA polymerase beta' chain
blastp_pdb 1i6v_D 1 257 + 257 Gaps:54 25.16 1264 36.16 8e-35 mol:protein length:1264 DNA-DIRECTED RNA POLYMERASE
blastp_pdb 3eql_N 1 257 + 257 Gaps:64 19.95 1524 37.50 1e-34 mol:protein length:1524 DNA-directed RNA polymerase subunit beta'
blastp_uniprot_sprot sp|Q09X27|RPOC2_MORIN 1 259 + 259 Gaps:41 22.82 1389 76.03 5e-86 DNA-directed RNA polymerase subunit beta'' OS Morus indica GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|A4QK08|RPOC2_ARAHI 1 259 + 259 Gaps:41 22.25 1371 77.70 9e-85 DNA-directed RNA polymerase subunit beta'' OS Arabis hirsuta GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|A4QKI2|RPOC2_CAPBU 1 259 + 259 Gaps:41 22.12 1379 78.03 1e-84 DNA-directed RNA polymerase subunit beta'' OS Capsella bursa-pastoris GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|A4QKS1|RPOC2_CRUWA 1 259 + 259 Gaps:41 22.12 1379 77.70 1e-84 DNA-directed RNA polymerase subunit beta'' OS Crucihimalaya wallichii GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|A4QLS3|RPOC2_NASOF 1 259 + 259 Gaps:41 22.12 1379 78.03 1e-84 DNA-directed RNA polymerase subunit beta'' OS Nasturtium officinale GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|P56764|RPOC2_ARATH 1 259 + 259 Gaps:41 22.17 1376 78.03 1e-84 DNA-directed RNA polymerase subunit beta'' OS Arabidopsis thaliana GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|A4QL96|RPOC2_LEPVR 1 259 + 259 Gaps:41 22.21 1373 77.70 1e-84 DNA-directed RNA polymerase subunit beta'' OS Lepidium virginicum GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|A4QJS3|RPOC2_OLIPU 1 259 + 259 Gaps:41 22.12 1379 77.70 1e-84 DNA-directed RNA polymerase subunit beta'' OS Olimarabidopsis pumila GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|A4QL09|RPOC2_DRANE 1 259 + 259 Gaps:41 22.09 1381 77.70 1e-84 DNA-directed RNA polymerase subunit beta'' OS Draba nemorosa GN rpoC2 PE 3 SV 1
blastp_uniprot_sprot sp|A4QJA5|RPOC2_AETCO 1 259 + 259 Gaps:41 22.02 1385 78.03 1e-84 DNA-directed RNA polymerase subunit beta'' OS Aethionema cordifolium GN rpoC2 PE 3 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 45 88 44 PF05000 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 4 IPR007083
Pfam 152 188 37 PF04998 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 5 IPR007081
Pfam 103 151 49 PF04998 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 5 IPR007081
PANTHER 1 260 260 PTHR19376:SF32 none none none
SUPERFAMILY 2 263 262 SSF64484 none none none
PANTHER 1 260 260 PTHR19376 none none none

0 Localization

0 Qtllist

0 Targeting