Protein : Qrob_P0241680.2 Q. robur
Protein Identifier  ? Qrob_P0241680.2 Organism . Name  Quercus robur
Score  5.0 Score Type  egn
Protein Description  (M=2) KOG0946//KOG1237//KOG1361//KOG2005 - ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking secretion and vesicular transport]. // H+/oligopeptide symporter [Amino acid transport and metabolism]. // Predicted hydrolase involved in interstrand cross-link repair [Replication recombination and repair]. // 26S proteasome regulatory complex subunit RPN1/PSMD2 [Posttranslational modification protein turnover chaperones]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1073  
Kegg Orthology  K03028
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0005215 transporter activity Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0030234 enzyme regulator activity Binds to and modulates the activity of an enzyme.
GO:0009236 cobalamin biosynthetic process The chemical reactions and pathways resulting in the formation of cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom.
GO:0016852 sirohydrochlorin cobaltochelatase activity Catalysis of the reaction: sirohydrochlorin + Co2+ = cobalt-sirohydrochlorin + 2 H+.
GO:0000502 proteasome complex A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.
GO:0042176 regulation of protein catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103328445 214 470 + 257 Gaps:1 85.71 301 87.98 5e-154 26S proteasome non-ATPase regulatory subunit 2 homolog A-like
blastp_kegg lcl|cam:101498643 214 474 + 261 Gaps:1 29.57 886 89.31 1e-151 26S proteasome non-ATPase regulatory subunit 2 1A-like
blastp_kegg lcl|cit:102617825 214 474 + 261 Gaps:1 29.41 891 88.17 4e-150 26S proteasome non-ATPase regulatory subunit 2 homolog A-like
blastp_kegg lcl|cic:CICLE_v10014210mg 214 474 + 261 Gaps:1 29.41 891 88.17 8e-150 hypothetical protein
blastp_kegg lcl|vvi:100255701 214 474 + 261 Gaps:1 29.44 890 88.17 1e-149 26S proteasome regulatory subunit N1-like
blastp_kegg lcl|tcc:TCM_008190 214 474 + 261 Gaps:1 29.60 885 89.69 2e-149 26S proteasome regulatory subunit S2 1A isoform 1
blastp_kegg lcl|mtr:MTR_4g078780 214 474 + 261 Gaps:1 29.57 886 88.17 3e-148 26S proteasome non-ATPase regulatory subunit
blastp_kegg lcl|mdm:103444431 214 474 + 261 Gaps:1 29.31 894 87.79 2e-147 26S proteasome non-ATPase regulatory subunit 2 homolog A
blastp_kegg lcl|gmx:100777078 214 474 + 261 Gaps:1 29.60 885 87.40 8e-147 26S proteasome non-ATPase regulatory subunit 2 homolog A-like
blastp_kegg lcl|pxb:103945447 214 474 + 261 Gaps:1 29.31 894 87.40 2e-146 26S proteasome non-ATPase regulatory subunit 2 homolog A
blastp_pdb 2w3c_A 73 122 + 50 none 8.67 577 60.00 3e-09 mol:protein length:577 GENERAL VESICULAR TRANSPORT FACTOR P115
blastp_pdb 3grl_A 73 122 + 50 none 7.68 651 60.00 3e-09 mol:protein length:651 General vesicular transport factor p115
blastp_pdb 3gq2_B 73 122 + 50 none 7.68 651 60.00 3e-09 mol:protein length:651 General vesicular transport factor p115
blastp_pdb 3gq2_A 73 122 + 50 none 7.68 651 60.00 3e-09 mol:protein length:651 General vesicular transport factor p115
blastp_uniprot_sprot sp|Q9SIV2|PSD2A_ARATH 214 474 + 261 Gaps:1 29.41 891 83.59 2e-142 26S proteasome non-ATPase regulatory subunit 2 homolog A OS Arabidopsis thaliana GN RPN1A PE 1 SV 2
blastp_uniprot_sprot sp|Q6XJG8|PSD2B_ARATH 214 474 + 261 Gaps:1 29.41 891 80.15 5e-135 26S proteasome non-ATPase regulatory subunit 2 homolog B OS Arabidopsis thaliana GN RPN1B PE 1 SV 1
blastp_uniprot_sprot sp|Q13200|PSMD2_HUMAN 214 471 + 258 Gaps:4 28.41 908 51.16 2e-73 26S proteasome non-ATPase regulatory subunit 2 OS Homo sapiens GN PSMD2 PE 1 SV 3
blastp_uniprot_sprot sp|Q5R9I6|PSMD2_PONAB 214 471 + 258 Gaps:4 28.41 908 50.78 4e-73 26S proteasome non-ATPase regulatory subunit 2 OS Pongo abelii GN PSMD2 PE 2 SV 1
blastp_uniprot_sprot sp|P56701|PSMD2_BOVIN 214 471 + 258 Gaps:4 28.41 908 50.78 1e-72 26S proteasome non-ATPase regulatory subunit 2 OS Bos taurus GN PSMD2 PE 1 SV 2
blastp_uniprot_sprot sp|Q4FZT9|PSMD2_RAT 214 471 + 258 Gaps:4 28.41 908 50.78 3e-72 26S proteasome non-ATPase regulatory subunit 2 OS Rattus norvegicus GN Psmd2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VDM4|PSMD2_MOUSE 214 471 + 258 Gaps:4 28.41 908 50.78 4e-72 26S proteasome non-ATPase regulatory subunit 2 OS Mus musculus GN Psmd2 PE 1 SV 1
blastp_uniprot_sprot sp|P87048|RPN1_SCHPO 214 471 + 258 Gaps:1 29.07 891 51.35 4e-68 26S proteasome regulatory subunit rpn1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpn1 PE 1 SV 2
blastp_uniprot_sprot sp|Q54BC6|PSMD2_DICDI 214 471 + 258 Gaps:3 29.00 893 47.88 2e-64 26S proteasome non-ATPase regulatory subunit 2 OS Dictyostelium discoideum GN psmD2 PE 1 SV 1
blastp_uniprot_sprot sp|B0F9L4|GOGC6_ARATH 73 214 + 142 Gaps:17 17.40 914 72.96 3e-62 Golgin candidate 6 OS Arabidopsis thaliana GN GC6 PE 1 SV 2
rpsblast_cdd gnl|CDD|34713 214 474 + 261 Gaps:2 29.85 881 44.49 1e-68 COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|178357 859 938 + 80 Gaps:1 51.30 154 67.09 2e-36 PLN02757 PLN02757 sirohydrochlorine ferrochelatase.
rpsblast_cdd gnl|CDD|110864 859 927 + 69 none 65.09 106 44.93 2e-18 pfam01903 CbiX CbiX. The function of CbiX is uncertain however it is found in cobalamin biosynthesis operons and so may have a related function. Some CbiX proteins contain a striking histidine-rich region at their C-terminus which suggests that it might be involved in metal chelation.
rpsblast_cdd gnl|CDD|48643 859 920 + 62 none 61.39 101 43.55 5e-15 cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB) N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase responsible for the chelation of Co2+ into sirohydrochlorin an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred..
rpsblast_cdd gnl|CDD|203664 595 700 + 106 Gaps:8 91.59 107 23.47 3e-11 pfam07522 DRMBL DNA repair metallo-beta-lactamase. The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in pfam00753 and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair.
rpsblast_cdd gnl|CDD|32321 859 926 + 68 Gaps:3 26.53 245 41.54 5e-11 COG2138 COG2138 Uncharacterized conserved protein [Function unknown].

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 482 554 73 G3DSA:3.60.15.10 none none IPR001279
Phobius 1020 1025 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 859 928 70 PF01903 "KEGG:00860+4.99.1.3","MetaCyc:PWY-7377","UniPathway:UPA00148" CbiX IPR002762
Phobius 1 1000 1000 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 483 702 220 SSF56281 none none IPR001279
PANTHER 214 474 261 PTHR10943:SF1 none none IPR016643
Pfam 595 699 105 PF07522 none DNA repair metallo-beta-lactamase IPR011084
PANTHER 214 474 261 PTHR10943 none none none
Phobius 1046 1072 27 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 988 1069 82 PF00854 "Reactome:REACT_15518","Reactome:REACT_19419" POT family IPR000109
SUPERFAMILY 858 928 71 SSF53800 none none none
Gene3D 859 928 70 G3DSA:3.40.50.1400 none none none
Phobius 1026 1045 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1001 1019 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1

0 Targeting