Protein : Qrob_P0240900.2 Q. robur
Protein Identifier  ? Qrob_P0240900.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR13068:SF8 - gb def: riken cdna 2410017i18 [mus musculus] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 511  
Kegg Orthology  K15032
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003690 double-stranded DNA binding Interacting selectively and non-covalently with double-stranded DNA.
GO:0005739 mitochondrion A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

13 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cam:101492104 29 510 + 482 Gaps:9 97.02 504 83.03 0.0 uncharacterized LOC101492104
blastp_kegg lcl|tcc:TCM_001393 31 510 + 480 Gaps:8 96.83 504 82.58 0.0 Mitochondrial transcription termination factor family protein
blastp_kegg lcl|pmum:103336094 9 510 + 502 Gaps:8 99.22 514 82.35 0.0 uncharacterized LOC103336094
blastp_kegg lcl|pxb:103957645 8 510 + 503 Gaps:11 99.41 511 82.48 0.0 uncharacterized LOC103957645
blastp_kegg lcl|gmx:100809590 29 510 + 482 Gaps:6 97.80 499 81.35 0.0 uncharacterized LOC100809590
blastp_kegg lcl|pvu:PHAVU_002G321600g 31 510 + 480 Gaps:1 97.17 495 81.08 0.0 hypothetical protein
blastp_kegg lcl|mdm:103449742 5 510 + 506 Gaps:8 99.41 511 81.89 0.0 uncharacterized LOC103449742
blastp_kegg lcl|vvi:100255927 57 510 + 454 none 94.39 481 86.56 0.0 uncharacterized LOC100255927
blastp_kegg lcl|pop:POPTR_0013s12100g 4 510 + 507 Gaps:31 100.00 514 79.57 0.0 mitochondrial transcription termination factor-related family protein
blastp_kegg lcl|csv:101224846 57 510 + 454 Gaps:2 87.98 516 83.48 0.0 uncharacterized LOC101224846
rpsblast_cdd gnl|CDD|178738 40 510 + 471 Gaps:8 95.48 487 67.96 0.0 PLN03196 PLN03196 MOC1-like protein Provisional.
rpsblast_cdd gnl|CDD|202273 114 461 + 348 Gaps:15 100.00 345 35.94 2e-92 pfam02536 mTERF mTERF. This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers.
rpsblast_kog gnl|CDD|36481 32 445 + 414 Gaps:53 88.86 413 27.52 3e-40 KOG1267 KOG1267 KOG1267 Mitochondrial transcription termination factor mTERF [Transcription General function prediction only].

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 51 508 458 PTHR13068 none none none
Pfam 115 460 346 PF02536 none mTERF IPR003690
SMART 166 197 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 274 305 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 382 413 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 347 377 31 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 202 233 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 414 445 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 101 129 29 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 310 342 33 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 130 161 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 238 269 32 SM00733 none Mitochondrial termination factor repeats IPR003690
PANTHER 51 508 458 PTHR13068:SF8 none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 64   Mitochondrion 4 0.064 0.616 NON-PLANT 64