Protein : Qrob_P0235380.2 Q. robur
Protein Identifier  ? Qrob_P0235380.2 Organism . Name  Quercus robur
Protein Description  (M=1) PTHR11689:SF67 - CHLORIDE CHANNEL PROTEIN CLC-A-RELATED (PTHR11689:SF67) Alias (in v1)  Qrob_P0376430.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 695  
Kegg Orthology  K05016
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0005247 voltage-gated chloride channel activity Enables the transmembrane transfer of a chloride ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
GO:0006821 chloride transport The directed movement of chloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:778094 4 687 + 684 Gaps:16 86.59 783 80.24 0.0 chloride channel
blastp_kegg lcl|pxb:103960894 4 694 + 691 Gaps:14 87.17 787 81.78 0.0 chloride channel protein CLC-b-like
blastp_kegg lcl|pvu:PHAVU_004G054600g 1 687 + 687 Gaps:14 86.83 782 80.56 0.0 hypothetical protein
blastp_kegg lcl|cam:101514756 24 694 + 671 Gaps:12 83.84 792 81.33 0.0 chloride channel protein CLC-b-like
blastp_kegg lcl|pvu:PHAVU_001G094700g 1 642 + 642 Gaps:15 84.77 742 81.24 0.0 hypothetical protein
blastp_kegg lcl|gmx:100788620 1 694 + 694 Gaps:16 87.47 790 80.75 0.0 chloride channel protein CLC-b-like
blastp_kegg lcl|pop:POPTR_0001s33920g 1 692 + 692 Gaps:15 87.13 785 80.85 0.0 POPTRDRAFT_829777 Chloride channel protein CLC-a
blastp_kegg lcl|csv:101210008 4 694 + 691 Gaps:15 87.07 789 80.35 0.0 CLCA chloride channel protein CLC-b-like
blastp_kegg lcl|cic:CICLE_v10014341mg 3 692 + 690 Gaps:13 87.36 783 81.73 0.0 hypothetical protein
blastp_kegg lcl|cit:102628105 3 692 + 690 Gaps:13 87.36 783 81.73 0.0 chloride channel protein CLC-b-like
blastp_pdb 3org_D 130 534 + 405 Gaps:77 54.11 632 32.16 2e-20 mol:protein length:632 CmCLC
blastp_pdb 3org_C 130 534 + 405 Gaps:77 54.11 632 32.16 2e-20 mol:protein length:632 CmCLC
blastp_pdb 3org_B 130 534 + 405 Gaps:77 54.11 632 32.16 2e-20 mol:protein length:632 CmCLC
blastp_pdb 3org_A 130 534 + 405 Gaps:77 54.11 632 32.16 2e-20 mol:protein length:632 CmCLC
blastp_pdb 1kpl_D 90 534 + 445 Gaps:95 77.38 473 30.05 2e-18 mol:protein length:473 putative ClC family chlorine transport prote
blastp_pdb 1kpl_C 90 534 + 445 Gaps:95 77.38 473 30.05 2e-18 mol:protein length:473 putative ClC family chlorine transport prote
blastp_pdb 1kpl_B 90 534 + 445 Gaps:95 77.38 473 30.05 2e-18 mol:protein length:473 putative ClC family chlorine transport prote
blastp_pdb 1kpl_A 90 534 + 445 Gaps:95 77.38 473 30.05 2e-18 mol:protein length:473 putative ClC family chlorine transport prote
blastp_pdb 3q17_B 91 370 + 280 Gaps:46 51.93 466 30.99 3e-10 mol:protein length:466 Sll0855 protein
blastp_pdb 3q17_A 91 370 + 280 Gaps:46 51.93 466 30.99 3e-10 mol:protein length:466 Sll0855 protein
blastp_uniprot_sprot sp|P92941|CLCA_ARATH 1 691 + 691 Gaps:12 86.19 775 76.80 0.0 Chloride channel protein CLC-a OS Arabidopsis thaliana GN CLC-A PE 1 SV 2
blastp_uniprot_sprot sp|P92942|CLCB_ARATH 22 691 + 670 Gaps:11 84.87 780 77.95 0.0 Chloride channel protein CLC-b OS Arabidopsis thaliana GN CLC-B PE 1 SV 1
blastp_uniprot_sprot sp|Q96282|CLCC_ARATH 23 684 + 662 Gaps:20 83.06 779 55.95 0.0 Chloride channel protein CLC-c OS Arabidopsis thaliana GN CLC-C PE 1 SV 1
blastp_uniprot_sprot sp|P60300|CLCG_ARATH 32 687 + 656 Gaps:22 83.40 765 55.49 0.0 Putative chloride channel-like protein CLC-g OS Arabidopsis thaliana GN CBSCLC6 PE 3 SV 2
blastp_uniprot_sprot sp|P92943|CLCD_ARATH 55 673 + 619 Gaps:29 76.26 792 47.35 3e-131 Chloride channel protein CLC-d OS Arabidopsis thaliana GN CLC-D PE 1 SV 2
blastp_uniprot_sprot sp|Q86AZ6|CLCB_DICDI 52 672 + 621 Gaps:68 76.93 815 35.25 3e-75 Chloride channel protein B OS Dictyostelium discoideum GN clcB PE 3 SV 1
blastp_uniprot_sprot sp|P51799|CLCN7_RAT 3 677 + 675 Gaps:49 80.07 803 33.59 9e-66 H(+)/Cl(-) exchange transporter 7 OS Rattus norvegicus GN Clcn7 PE 2 SV 1
blastp_uniprot_sprot sp|O70496|CLCN7_MOUSE 3 677 + 675 Gaps:49 80.07 803 33.44 3e-65 H(+)/Cl(-) exchange transporter 7 OS Mus musculus GN Clcn7 PE 1 SV 1
blastp_uniprot_sprot sp|Q75JF3|CLCC_DICDI 35 539 + 505 Gaps:24 64.60 757 31.90 4e-65 Chloride channel protein C OS Dictyostelium discoideum GN clcC PE 3 SV 1
blastp_uniprot_sprot sp|Q9TT16|CLCN6_RABIT 56 539 + 484 Gaps:34 56.62 869 34.55 3e-62 Chloride transport protein 6 OS Oryctolagus cuniculus GN CLCN6 PE 2 SV 1

40 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 316 334 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 538 694 157 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 16 685 670 PTHR11689 none none none
Phobius 518 537 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 82 82 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PRINTS 260 279 20 PR00762 none Chloride channel signature IPR001807
PRINTS 486 506 21 PR00762 none Chloride channel signature IPR001807
PRINTS 156 173 18 PR00762 none Chloride channel signature IPR001807
PRINTS 518 534 17 PR00762 none Chloride channel signature IPR001807
Phobius 335 339 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 623 673 51 PF00571 none CBS domain IPR000644
Phobius 403 466 64 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 72 401 330 G3DSA:1.10.3080.10 none none IPR014743
Gene3D 443 539 97 G3DSA:1.10.3080.10 none none IPR014743
Phobius 340 361 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 16 685 670 PTHR11689:SF67 none none none
Gene3D 550 575 26 G3DSA:3.10.580.10 none none none
Gene3D 609 673 65 G3DSA:3.10.580.10 none none none
Phobius 305 315 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 621 686 66 PS51371 none CBS domain profile. IPR000644
PRINTS 281 289 9 PR01120 none Plant CLC chloride channel signature IPR002251
PRINTS 438 454 17 PR01120 none Plant CLC chloride channel signature IPR002251
PRINTS 61 69 9 PR01120 none Plant CLC chloride channel signature IPR002251
PRINTS 295 305 11 PR01120 none Plant CLC chloride channel signature IPR002251
PRINTS 313 320 8 PR01120 none Plant CLC chloride channel signature IPR002251
Phobius 83 109 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 552 674 123 SSF54631 none none none
Phobius 129 155 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 110 128 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 467 497 31 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

5 Localization

Analysis Start End Length
TMHMM 83 105 22
TMHMM 288 310 22
TMHMM 340 362 22
TMHMM 132 154 22
TMHMM 467 489 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9

0 Targeting