Protein : Qrob_P0234670.2 Q. robur
Protein Identifier  ? Qrob_P0234670.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASE II Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 239  
Kegg Orthology  K03013
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0001s06280g 16 237 + 222 Gaps:2 96.14 233 61.16 1e-95 POPTRDRAFT_547832 eukaryotic rpb5 RNA polymerase subunit family protein
blastp_kegg lcl|fve:101312481 11 237 + 227 Gaps:1 99.12 228 58.41 2e-88 DNA-directed RNA polymerases I II and III subunit RPABC1-like
blastp_kegg lcl|tcc:TCM_045327 1 238 + 238 Gaps:31 100.00 263 53.99 6e-88 RNA polymerase II fifth largest subunit putative isoform 1
blastp_kegg lcl|rcu:RCOM_1452980 28 237 + 210 none 87.87 239 60.48 5e-86 DNA-directed RNA polymerase II putative
blastp_kegg lcl|pper:PRUPE_ppa018371mg 26 238 + 213 none 99.53 214 61.97 9e-83 hypothetical protein
blastp_kegg lcl|mdm:103438549 19 237 + 219 none 94.81 231 57.53 2e-78 DNA-directed RNA polymerase V subunit 5C
blastp_kegg lcl|pxb:103937885 12 237 + 226 none 98.69 229 52.21 2e-78 DNA-directed RNA polymerase V subunit 5A-like
blastp_kegg lcl|pxb:103932172 12 237 + 226 none 98.69 229 52.21 2e-78 DNA-directed RNA polymerase V subunit 5A-like
blastp_kegg lcl|vvi:100258335 21 237 + 217 Gaps:1 97.74 221 55.09 7e-78 DNA-directed RNA polymerases I II and III subunit RPABC1-like
blastp_kegg lcl|pop:POPTR_0016s03800g 29 237 + 209 none 86.01 243 54.07 9e-78 POPTRDRAFT_777047 hypothetical protein
blastp_pdb 3h0g_Q 43 235 + 193 Gaps:15 94.29 210 33.84 1e-24 mol:protein length:210 DNA-directed RNA polymerases I II and III s
blastp_pdb 3h0g_E 43 235 + 193 Gaps:15 94.29 210 33.84 1e-24 mol:protein length:210 DNA-directed RNA polymerases I II and III s
blastp_pdb 4a93_E 43 238 + 196 Gaps:19 95.35 215 31.71 2e-23 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3m_E 43 238 + 196 Gaps:19 95.35 215 31.71 2e-23 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3l_E 43 238 + 196 Gaps:19 95.35 215 31.71 2e-23 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3k_E 43 238 + 196 Gaps:19 95.35 215 31.71 2e-23 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3j_E 43 238 + 196 Gaps:19 95.35 215 31.71 2e-23 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3i_E 43 238 + 196 Gaps:19 95.35 215 31.71 2e-23 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3g_E 43 238 + 196 Gaps:19 95.35 215 31.71 2e-23 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3f_E 43 238 + 196 Gaps:19 95.35 215 31.71 2e-23 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_uniprot_sprot sp|Q9M1H8|RPE5C_ARATH 1 238 + 238 Gaps:9 98.28 233 51.53 8e-71 DNA-directed RNA polymerase V subunit 5C OS Arabidopsis thaliana GN NRPE5C PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZVB9|RPD5B_ARATH 23 237 + 215 none 98.62 218 45.58 2e-67 DNA-directed RNA polymerases IV and V subunit 5B OS Arabidopsis thaliana GN NRPD5B PE 1 SV 1
blastp_uniprot_sprot sp|Q9M1J2|RPE5A_ARATH 29 237 + 209 none 94.14 222 47.37 4e-67 DNA-directed RNA polymerase V subunit 5A OS Arabidopsis thaliana GN NRPE5A PE 1 SV 1
blastp_uniprot_sprot sp|A8XGH1|RPAB1_CAEBR 40 238 + 199 Gaps:8 97.16 211 37.56 2e-37 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Caenorhabditis briggsae GN rpb-5 PE 3 SV 1
blastp_uniprot_sprot sp|Q9N5K2|RPAB1_CAEEL 40 238 + 199 Gaps:8 97.16 211 37.07 2e-36 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Caenorhabditis elegans GN rpb-5 PE 3 SV 1
blastp_uniprot_sprot sp|Q5R587|RPAB1_PONAB 36 237 + 202 Gaps:8 99.05 210 34.62 1e-34 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Pongo abelii GN POLR2E PE 2 SV 1
blastp_uniprot_sprot sp|O81098|RPB5A_ARATH 40 238 + 199 Gaps:9 97.56 205 38.00 1e-34 DNA-directed RNA polymerases II and IV subunit 5A OS Arabidopsis thaliana GN NRPB5A PE 1 SV 1
blastp_uniprot_sprot sp|B0BNE2|RPAB1_RAT 36 237 + 202 Gaps:8 99.05 210 34.13 2e-34 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Rattus norvegicus GN Polr2e PE 2 SV 1
blastp_uniprot_sprot sp|Q80UW8|RPAB1_MOUSE 36 237 + 202 Gaps:8 99.05 210 34.13 2e-34 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Mus musculus GN Polr2e PE 2 SV 1
blastp_uniprot_sprot sp|P19388|RPAB1_HUMAN 36 237 + 202 Gaps:8 99.05 210 33.65 8e-33 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Homo sapiens GN POLR2E PE 1 SV 4

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 35 238 204 PTHR10535 none none none
PANTHER 35 238 204 PTHR10535:SF2 none none none
SUPERFAMILY 39 166 128 SSF53036 none none IPR005571
ProDom 172 237 66 PD005155 none RNA POLYMERASE DNA-DIRECTED SUBUNIT NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION II H POLYPEPTIDE IPR000783
PIRSF 33 238 206 PIRSF000747 none none IPR014381
Gene3D 166 237 72 G3DSA:3.90.940.20 none none IPR000783
Pfam 39 123 85 PF03871 none RNA polymerase Rpb5, N-terminal domain IPR005571
Gene3D 35 165 131 G3DSA:3.40.1340.10 none none IPR005571
Pfam 165 237 73 PF01191 none RNA polymerase Rpb5, C-terminal domain IPR000783
SUPERFAMILY 163 237 75 SSF55287 none none IPR000783

0 Localization

0 Qtllist

0 Targeting