Protein : Qrob_P0233440.2 Q. robur
Protein Identifier  ? Qrob_P0233440.2 Organism . Name  Quercus robur
Score  8.3 Score Type  egn
Protein Description  (M=4) K10956 - protein transport protein SEC61 subunit alpha Gene Prediction Quality  validated
Protein length 

Sequence

Length: 203  
Kegg Orthology  K10956
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0015031 protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100855182 1 202 + 202 Gaps:36 78.29 304 76.05 4e-115 protein transport protein Sec61 subunit alpha-like
blastp_kegg lcl|vvi:100854110 1 202 + 202 Gaps:36 75.80 314 76.05 5e-115 protein transport protein Sec61 subunit alpha-like
blastp_kegg lcl|tcc:TCM_029640 1 202 + 202 Gaps:36 50.00 476 77.31 2e-114 SecY protein transport family protein
blastp_kegg lcl|pmum:103342712 1 202 + 202 Gaps:36 50.00 476 76.89 6e-114 protein transport protein Sec61 subunit alpha-like
blastp_kegg lcl|pvu:PHAVU_005G081100g 1 202 + 202 Gaps:36 50.00 476 76.89 7e-114 hypothetical protein
blastp_kegg lcl|pxb:103926870 1 202 + 202 Gaps:36 50.00 476 76.47 1e-113 protein transport protein Sec61 subunit alpha-like
blastp_kegg lcl|pmum:103325971 1 202 + 202 Gaps:36 50.00 476 76.47 1e-113 protein transport protein Sec61 subunit alpha
blastp_kegg lcl|fve:101311165 1 202 + 202 Gaps:36 50.00 476 76.47 1e-113 protein transport protein Sec61 subunit alpha-like
blastp_kegg lcl|pxb:103934872 1 202 + 202 Gaps:36 50.00 476 76.47 1e-113 protein transport protein Sec61 subunit alpha-like
blastp_kegg lcl|pper:PRUPE_ppa005131mg 1 202 + 202 Gaps:36 50.00 476 76.47 2e-113 hypothetical protein
blastp_pdb 2wwb_A 6 202 + 197 Gaps:37 48.74 476 50.00 1e-62 mol:protein length:476 PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA
blastp_pdb 3mp7_A 17 158 + 142 Gaps:25 34.23 482 29.70 1e-16 mol:protein length:482 Preprotein translocase subunit secY
blastp_pdb 2yxr_A 13 158 + 146 Gaps:17 36.38 426 37.42 6e-16 mol:protein length:426 Preprotein translocase subunit secY
blastp_pdb 2yxq_A 13 158 + 146 Gaps:22 37.12 431 36.25 3e-15 mol:protein length:431 Preprotein translocase subunit secY
blastp_pdb 1rh5_A 13 158 + 146 Gaps:27 37.84 436 35.15 1e-14 mol:protein length:436 Preprotein translocase secY subunit
blastp_pdb 3dkn_A 13 158 + 146 Gaps:27 38.37 430 35.15 1e-14 mol:protein length:430 Preprotein translocase subunit secY
blastp_pdb 1rhz_A 13 158 + 146 Gaps:27 37.84 436 35.15 1e-14 mol:protein length:436 Preprotein translocase secY subunit
blastp_pdb 3kcr_A 13 158 + 146 Gaps:27 37.33 442 35.15 2e-14 mol:protein length:442 PREPROTEIN TRANSLOCASE SECY SUBUNIT
blastp_pdb 3bo1_A 13 158 + 146 Gaps:27 37.33 442 35.15 2e-14 mol:protein length:442 PREPROTEIN TRANSLOCASE SecY SUBUNIT
blastp_pdb 3bo0_A 13 158 + 146 Gaps:27 37.33 442 35.15 2e-14 mol:protein length:442 PREPROTEIN TRANSLOCASE SecY SUBUNIT
blastp_uniprot_sprot sp|P38379|SC61A_PYRSA 4 202 + 199 Gaps:36 47.57 494 53.62 1e-74 Protein transport protein Sec61 subunit alpha OS Pyrenomonas salina PE 2 SV 1
blastp_uniprot_sprot sp|Q54XK2|SC61A_DICDI 4 202 + 199 Gaps:36 49.47 475 54.47 1e-74 Protein transport protein Sec61 subunit alpha OS Dictyostelium discoideum GN sec61a PE 3 SV 1
blastp_uniprot_sprot sp|Q8AY33|SC61A_BORSA 4 202 + 199 Gaps:37 49.16 476 51.71 5e-66 Protein transport protein Sec61 subunit alpha OS Boreogadus saida GN sec61a PE 2 SV 3
blastp_uniprot_sprot sp|Q9JLR1|S61A2_MOUSE 4 202 + 199 Gaps:37 49.16 476 52.14 3e-65 Protein transport protein Sec61 subunit alpha isoform 2 OS Mus musculus GN Sec61a2 PE 2 SV 3
blastp_uniprot_sprot sp|Q9H9S3|S61A2_HUMAN 4 202 + 199 Gaps:37 49.16 476 52.14 3e-65 Protein transport protein Sec61 subunit alpha isoform 2 OS Homo sapiens GN SEC61A2 PE 2 SV 3
blastp_uniprot_sprot sp|Q2KHX4|S61A2_BOVIN 4 202 + 199 Gaps:37 49.16 476 52.14 3e-65 Protein transport protein Sec61 subunit alpha isoform 2 OS Bos taurus GN SEC61A2 PE 2 SV 3
blastp_uniprot_sprot sp|Q7T278|SC61A_HARAN 4 202 + 199 Gaps:37 49.16 476 51.28 8e-65 Protein transport protein Sec61 subunit alpha OS Harpagifer antarcticus GN sec61a PE 2 SV 3
blastp_uniprot_sprot sp|Q7T277|SC61A_DISMA 4 202 + 199 Gaps:37 49.16 476 51.28 8e-65 Protein transport protein Sec61 subunit alpha OS Dissostichus mawsoni GN sec61a PE 2 SV 3
blastp_uniprot_sprot sp|Q8AY36|SC61A_PAGBO 4 202 + 199 Gaps:37 49.16 476 51.28 8e-65 Protein transport protein Sec61 subunit alpha OS Pagothenia borchgrevinki GN sec61a PE 2 SV 3
blastp_uniprot_sprot sp|Q8AY35|SC61A_NOTAN 4 202 + 199 Gaps:37 49.16 476 51.28 8e-65 Protein transport protein Sec61 subunit alpha OS Notothenia angustata GN sec61a PE 2 SV 3

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 10 175 166 SSF103491 none none IPR023201
Phobius 97 116 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 69 157 89 PF00344 "Reactome:REACT_15380" SecY translocase IPR002208
Gene3D 69 201 133 G3DSA:1.10.3370.10 none none IPR023201
Gene3D 10 63 54 G3DSA:1.10.3370.10 none none IPR023201
Phobius 145 202 58 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 3 202 200 PTHR10906 "Reactome:REACT_15380";signature_desc=SECY/SEC61-ALPHA FAMILY MEMBER none IPR002208
Phobius 1 96 96 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 117 121 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 122 144 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

2 Localization

Analysis Start End Length
TMHMM 98 120 22
TMHMM 122 144 22

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 21   Mitochondrion 4 0.505 0.727 NON-PLANT 21