3 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0016021 | integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
| GO:0015095 | magnesium ion transmembrane transporter activity | Enables the transfer of magnesium (Mg) ions from one side of a membrane to the other. |
| GO:0015693 | magnesium ion transport | The directed movement of magnesium (Mg) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
11 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|mdm:103404508 | 1 | 109 | + | 109 | Gaps:25 | 46.69 | 287 | 75.37 | 8e-60 | uncharacterized LOC103404508 |
| blastp_kegg | lcl|pmum:103330418 | 1 | 109 | + | 109 | Gaps:25 | 30.18 | 444 | 76.12 | 5e-59 | uncharacterized LOC103330418 |
| blastp_kegg | lcl|pper:PRUPE_ppa005773mg | 1 | 109 | + | 109 | Gaps:25 | 30.18 | 444 | 76.12 | 6e-59 | hypothetical protein |
| blastp_kegg | lcl|pxb:103936992 | 1 | 109 | + | 109 | Gaps:25 | 30.18 | 444 | 74.63 | 6e-58 | uncharacterized LOC103936992 |
| blastp_kegg | lcl|fve:101306448 | 1 | 109 | + | 109 | Gaps:25 | 30.25 | 443 | 75.37 | 3e-57 | NIPA-like protein 2-like |
| blastp_kegg | lcl|mdm:103442068 | 1 | 109 | + | 109 | Gaps:25 | 30.18 | 444 | 73.88 | 5e-57 | uncharacterized LOC103442068 |
| blastp_kegg | lcl|pxb:103966622 | 1 | 109 | + | 109 | Gaps:25 | 16.77 | 799 | 75.37 | 7e-57 | uncharacterized LOC103966622 |
| blastp_kegg | lcl|gmx:100812264 | 1 | 109 | + | 109 | Gaps:24 | 30.02 | 443 | 72.93 | 3e-56 | uncharacterized LOC100812264 |
| blastp_kegg | lcl|gmx:100778788 | 1 | 109 | + | 109 | Gaps:24 | 30.16 | 441 | 72.93 | 5e-56 | magnesium transporter NIPA3-like |
| blastp_kegg | lcl|brp:103875282 | 1 | 109 | + | 109 | Gaps:25 | 29.60 | 446 | 75.00 | 2e-55 | NIPA-like protein 2 |
| rpsblast_kog | gnl|CDD|38133 | 1 | 109 | + | 109 | Gaps:29 | 38.21 | 335 | 14.84 | 2e-13 | KOG2922 KOG2922 KOG2922 Uncharacterized conserved protein [Function unknown]. |
9 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Phobius | 84 | 103 | 20 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Phobius | 6 | 25 | 20 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| PANTHER | 1 | 112 | 112 | PTHR12570:SF9 | none | none | none |
| PANTHER | 1 | 112 | 112 | PTHR12570 | none | none | IPR008521 |
| Phobius | 59 | 78 | 20 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Phobius | 1 | 5 | 5 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| Phobius | 26 | 58 | 33 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| Phobius | 79 | 83 | 5 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| Phobius | 104 | 115 | 12 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
6 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran2_2014_nLBD*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 34,91 | 16,12 | 53,62 | lod | 2,4961 | 5,2 |
| Bourran_2000_2002_QTL6_Delta.F | Qrob_Chr03 | 3 | s_2HYXJ2_207 | s_1AUAXK_317 | 29.12 | 6,3 | 45,37 | lod | 3.1666 | 0.026 |
| Bourran2_2014_nLBD_3P | Qrob_Chr03 | 3 | s_1ET7H8_604 | s_1BYNB5_834 | 23,73 | 0 | 46,72 | lod | 1,7573 | 3,8 |
| PM_1999_QTL14_peak_Bud_burst_3P | Qrob_Chr03 | 3 | s_2F0SI1_756 | v_6056_735 | 11,78 | 3,78 | 50,78 | lod | 2,5 | 4,5 |
| Bourran2_2014_nFork*_3P | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 34,28 | 7,43 | 41,48 | lod | 2,4044 | 5,5 |
| Bourran2_2014_rEpiBC*_3P | Qrob_Chr03 | 3 | s_1A3B3X_1163 | s_1DKGMO_450 | 23,04 | 4,92 | 41,12 | lod | 2,5668 | 7 |
