3 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0016021 | integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
| GO:0015095 | magnesium ion transmembrane transporter activity | Enables the transfer of magnesium (Mg) ions from one side of a membrane to the other. |
| GO:0015693 | magnesium ion transport | The directed movement of magnesium (Mg) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
12 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|tcc:TCM_017396 | 9 | 322 | + | 314 | Gaps:13 | 69.93 | 439 | 77.20 | 2e-167 | Uncharacterized protein isoform 1 |
| blastp_kegg | lcl|pmum:103330418 | 2 | 321 | + | 320 | Gaps:14 | 71.17 | 444 | 75.32 | 1e-165 | uncharacterized LOC103330418 |
| blastp_kegg | lcl|pper:PRUPE_ppa005773mg | 9 | 321 | + | 313 | Gaps:14 | 69.59 | 444 | 76.05 | 5e-164 | hypothetical protein |
| blastp_kegg | lcl|pop:POPTR_0014s13580g | 9 | 322 | + | 314 | Gaps:20 | 75.61 | 410 | 75.48 | 9e-163 | POPTRDRAFT_824226 hypothetical protein |
| blastp_kegg | lcl|pxb:103936992 | 2 | 321 | + | 320 | Gaps:14 | 71.17 | 444 | 73.73 | 5e-162 | uncharacterized LOC103936992 |
| blastp_kegg | lcl|mdm:103442068 | 9 | 321 | + | 313 | Gaps:14 | 69.59 | 444 | 75.08 | 1e-161 | uncharacterized LOC103442068 |
| blastp_kegg | lcl|pvu:PHAVU_004G068100g | 2 | 319 | + | 318 | Gaps:21 | 70.81 | 442 | 72.84 | 5e-158 | hypothetical protein |
| blastp_kegg | lcl|crb:CARUB_v10019534mg | 9 | 315 | + | 307 | Gaps:22 | 69.00 | 442 | 72.13 | 1e-153 | hypothetical protein |
| blastp_kegg | lcl|pxb:103966622 | 2 | 321 | + | 320 | Gaps:14 | 39.55 | 799 | 72.47 | 7e-153 | uncharacterized LOC103966622 |
| blastp_kegg | lcl|aly:ARALYDRAFT_484434 | 9 | 315 | + | 307 | Gaps:22 | 69.16 | 441 | 71.80 | 2e-152 | hypothetical protein |
| rpsblast_cdd | gnl|CDD|114381 | 24 | 183 | + | 160 | Gaps:16 | 48.67 | 300 | 20.55 | 6e-07 | pfam05653 Mg_trans_NIPA Magnesium transporter NIPA. NIPA (nonimprinted in Prader-Willi/Angelman syndrome) is a family of integral membrane proteins which function as magnesium transporters. |
| rpsblast_kog | gnl|CDD|38133 | 8 | 212 | + | 205 | Gaps:14 | 57.01 | 335 | 23.56 | 3e-37 | KOG2922 KOG2922 KOG2922 Uncharacterized conserved protein [Function unknown]. |
16 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| PANTHER | 64 | 317 | 254 | PTHR12570 | none | none | IPR008521 |
| Phobius | 132 | 155 | 24 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Phobius | 63 | 83 | 21 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Phobius | 167 | 184 | 18 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Phobius | 84 | 102 | 19 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| PANTHER | 8 | 47 | 40 | PTHR12570:SF9 | none | none | none |
| Phobius | 43 | 62 | 20 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| Phobius | 103 | 120 | 18 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| PANTHER | 8 | 47 | 40 | PTHR12570 | none | none | IPR008521 |
| Phobius | 121 | 131 | 11 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| Phobius | 185 | 322 | 138 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| Pfam | 68 | 184 | 117 | PF05653 | none | Magnesium transporter NIPA | IPR008521 |
| Phobius | 156 | 166 | 11 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| PANTHER | 64 | 317 | 254 | PTHR12570:SF9 | none | none | none |
| Phobius | 1 | 23 | 23 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| Phobius | 24 | 42 | 19 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
5 Localization
| Analysis | Start | End | Length |
|---|---|---|---|
| TMHMM | 104 | 123 | 19 |
| TMHMM | 168 | 185 | 17 |
| TMHMM | 133 | 155 | 22 |
| TMHMM | 19 | 41 | 22 |
| TMHMM | 61 | 83 | 22 |
6 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran2_2014_nLBD*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 34,91 | 16,12 | 53,62 | lod | 2,4961 | 5,2 |
| Bourran_2000_2002_QTL6_Delta.F | Qrob_Chr03 | 3 | s_2HYXJ2_207 | s_1AUAXK_317 | 29.12 | 6,3 | 45,37 | lod | 3.1666 | 0.026 |
| Bourran2_2014_nLBD_3P | Qrob_Chr03 | 3 | s_1ET7H8_604 | s_1BYNB5_834 | 23,73 | 0 | 46,72 | lod | 1,7573 | 3,8 |
| PM_1999_QTL14_peak_Bud_burst_3P | Qrob_Chr03 | 3 | s_2F0SI1_756 | v_6056_735 | 11,78 | 3,78 | 50,78 | lod | 2,5 | 4,5 |
| Bourran2_2014_nFork*_3P | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 34,28 | 7,43 | 41,48 | lod | 2,4044 | 5,5 |
| Bourran2_2014_rEpiBC*_3P | Qrob_Chr03 | 3 | s_1A3B3X_1163 | s_1DKGMO_450 | 23,04 | 4,92 | 41,12 | lod | 2,5668 | 7 |
