Protein : Qrob_P0222640.2 Q. robur
Protein Identifier  ? Qrob_P0222640.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR13501//PTHR13501:SF1 - CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 279  
Kegg Orthology  K02890
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015934 large ribosomal subunit The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_023088 1 277 + 277 Gaps:5 99.64 275 82.85 7e-154 Ribosomal protein L22p/L17e family protein
blastp_kegg lcl|vvi:100266839 1 274 + 274 Gaps:3 100.00 271 78.60 2e-150 50S ribosomal protein L22 chloroplastic-like
blastp_kegg lcl|cit:102608144 1 274 + 274 Gaps:7 98.89 270 77.15 3e-144 50S ribosomal protein L22 chloroplastic-like
blastp_kegg lcl|pop:POPTR_0016s06740g 1 277 + 277 Gaps:14 99.64 278 75.45 1e-140 POPTRDRAFT_256186 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10013709mg 1 274 + 274 Gaps:7 98.89 270 77.15 7e-139 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa009843mg 1 267 + 267 Gaps:15 96.73 275 77.07 1e-136 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0422010 1 277 + 277 Gaps:6 99.64 278 74.37 4e-135 50S ribosomal protein L22 putative
blastp_kegg lcl|csv:101203231 1 270 + 270 Gaps:3 99.26 271 71.00 5e-131 50S ribosomal protein L22 chloroplastic-like
blastp_kegg lcl|fve:101304306 1 277 + 277 Gaps:8 99.63 272 71.96 9e-127 50S ribosomal protein L22 chloroplastic-like
blastp_kegg lcl|sly:101254078 1 269 + 269 Gaps:9 97.42 271 69.70 3e-122 50S ribosomal protein L22 chloroplastic-like
blastp_pdb 3pip_P 117 221 + 105 none 78.36 134 37.14 3e-14 mol:protein length:134 50S ribosomal protein L22
blastp_pdb 3pio_P 117 221 + 105 none 78.36 134 37.14 3e-14 mol:protein length:134 50S ribosomal protein L22
blastp_pdb 3dll_P 117 221 + 105 none 78.36 134 37.14 3e-14 mol:protein length:134 50S ribosomal protein L22
blastp_pdb 3cf5_P 117 221 + 105 none 78.36 134 37.14 3e-14 mol:protein length:134 50S RIBOSOMAL PROTEIN L22
blastp_pdb 2zjr_P 117 221 + 105 none 78.36 134 37.14 3e-14 mol:protein length:134 50S ribosomal protein L22
blastp_pdb 2zjq_P 117 221 + 105 none 78.36 134 37.14 3e-14 mol:protein length:134 50S ribosomal protein L22
blastp_pdb 2zjp_P 117 221 + 105 none 78.36 134 37.14 3e-14 mol:protein length:134 50S RIBOSOMAL PROTEIN L22
blastp_pdb 1xbp_Q 117 221 + 105 none 78.36 134 37.14 3e-14 mol:protein length:134 50S ribosomal protein L22
blastp_pdb 1sm1_Q 117 221 + 105 none 78.36 134 37.14 3e-14 mol:protein length:134 50S RIBOSOMAL PROTEIN L22
blastp_pdb 1ond_Q 117 221 + 105 none 78.36 134 37.14 3e-14 mol:protein length:134 50S ribosomal protein L22
blastp_uniprot_sprot sp|Q92QG5|RL22_RHIME 111 228 + 118 none 91.47 129 48.31 2e-27 50S ribosomal protein L22 OS Rhizobium meliloti (strain 1021) GN rplV PE 3 SV 1
blastp_uniprot_sprot sp|A6U864|RL22_SINMW 111 228 + 118 none 91.47 129 48.31 2e-27 50S ribosomal protein L22 OS Sinorhizobium medicae (strain WSM419) GN rplV PE 3 SV 1
blastp_uniprot_sprot sp|B2IK67|RL22_BEII9 113 224 + 112 none 86.82 129 48.21 4e-26 50S ribosomal protein L22 OS Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN rplV PE 3 SV 1
blastp_uniprot_sprot sp|Q2K9L1|RL22_RHIEC 111 228 + 118 none 91.47 129 46.61 1e-25 50S ribosomal protein L22 OS Rhizobium etli (strain CFN 42 / ATCC 51251) GN rplV PE 3 SV 1
blastp_uniprot_sprot sp|Q8UE23|RL22_AGRT5 111 231 + 121 Gaps:2 92.25 129 47.90 1e-25 50S ribosomal protein L22 OS Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN rplV PE 3 SV 1
blastp_uniprot_sprot sp|Q98N52|RL22_RHILO 113 231 + 119 Gaps:2 90.70 129 47.01 1e-24 50S ribosomal protein L22 OS Rhizobium loti (strain MAFF303099) GN rplV PE 3 SV 1
blastp_uniprot_sprot sp|B8ELF8|RL22_METSB 111 228 + 118 none 92.19 128 44.07 1e-24 50S ribosomal protein L22 OS Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN rplV PE 3 SV 1
blastp_uniprot_sprot sp|Q6FZC7|RL22_BARQU 111 228 + 118 none 91.47 129 45.76 2e-24 50S ribosomal protein L22 OS Bartonella quintana (strain Toulouse) GN rplV PE 3 SV 1
blastp_uniprot_sprot sp|Q6G2X0|RL22_BARHE 111 231 + 121 Gaps:2 92.25 129 45.38 4e-24 50S ribosomal protein L22 OS Bartonella henselae (strain ATCC 49882 / Houston 1) GN rplV PE 3 SV 1
blastp_uniprot_sprot sp|B0CH27|RL22_BRUSI 111 228 + 118 Gaps:2 91.34 127 44.83 8e-24 50S ribosomal protein L22 OS Brucella suis (strain ATCC 23445 / NCTC 10510) GN rplV PE 3 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Hamap 113 222 110 MF_01331_B none 50S ribosomal protein L22 [rplV]. IPR005727
TIGRFAM 118 219 102 TIGR01044 none rplV_bact: ribosomal protein uL22 IPR005727
Pfam 117 221 105 PF00237 none Ribosomal protein L22p/L17e IPR001063
Gene3D 114 222 109 G3DSA:3.90.470.10 none none IPR001063
PANTHER 26 263 238 PTHR13501 none none IPR005727
SUPERFAMILY 106 222 117 SSF54843 none none IPR001063
PANTHER 26 263 238 PTHR13501:SF1 none none none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 36   Mitochondrion 2 0.035 0.905 NON-PLANT 36