7 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0005525 | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
| GO:0007017 | microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. |
| GO:0003924 | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. |
| GO:0043234 | protein complex | A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical. |
| GO:0051258 | protein polymerization | The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein. |
| GO:0005874 | microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. |
| GO:0005200 | structural constituent of cytoskeleton | The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. |
43 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|pvu:PHAVU_010G006400g | 1 | 442 | + | 442 | none | 98.44 | 449 | 97.74 | 0.0 | hypothetical protein |
| blastp_kegg | lcl|gmx:100811275 | 1 | 442 | + | 442 | none | 98.44 | 449 | 97.96 | 0.0 | tubulin beta-2 chain-like |
| blastp_kegg | lcl|gmx:100816898 | 1 | 442 | + | 442 | none | 98.44 | 449 | 97.96 | 0.0 | tubulin beta-2 chain-like |
| blastp_kegg | lcl|cic:CICLE_v10011723mg | 1 | 444 | + | 444 | none | 99.78 | 445 | 97.30 | 0.0 | hypothetical protein |
| blastp_kegg | lcl|csv:101210703 | 1 | 446 | + | 446 | none | 100.00 | 446 | 96.86 | 0.0 | tubulin beta-1 chain-like |
| blastp_kegg | lcl|tcc:TCM_021786 | 1 | 441 | + | 441 | none | 99.32 | 444 | 97.96 | 0.0 | Tubulin beta 8 |
| blastp_kegg | lcl|pxb:103959622 | 1 | 443 | + | 443 | none | 99.11 | 447 | 97.52 | 0.0 | tubulin beta chain |
| blastp_kegg | lcl|pxb:103959609 | 1 | 443 | + | 443 | none | 99.11 | 447 | 97.52 | 0.0 | tubulin beta chain |
| blastp_kegg | lcl|mdm:103433554 | 1 | 443 | + | 443 | none | 99.11 | 447 | 97.52 | 0.0 | tubulin beta chain |
| blastp_kegg | lcl|cic:CICLE_v10004755mg | 1 | 443 | + | 443 | Gaps:3 | 86.77 | 514 | 96.86 | 0.0 | hypothetical protein |
| blastp_pdb | 3iz0_B | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.21 | 0.0 | mol:protein length:445 beta tubulin Chain B from PDB 1JFF |
| blastp_pdb | 3edl_G | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.21 | 0.0 | mol:protein length:445 Beta tubulin |
| blastp_pdb | 3edl_B | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.21 | 0.0 | mol:protein length:445 Beta tubulin |
| blastp_pdb | 3dco_B | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.21 | 0.0 | mol:protein length:445 Bovine Beta Tubulin |
| blastp_pdb | 2xrp_G | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.21 | 0.0 | mol:protein length:445 TUBULIN BETA-2B CHAIN |
| blastp_pdb | 2xrp_E | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.21 | 0.0 | mol:protein length:445 TUBULIN BETA-2B CHAIN |
| blastp_pdb | 2xrp_C | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.21 | 0.0 | mol:protein length:445 TUBULIN BETA-2B CHAIN |
| blastp_pdb | 2xrp_A | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.21 | 0.0 | mol:protein length:445 TUBULIN BETA-2B CHAIN |
| blastp_pdb | 2wbe_B | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.21 | 0.0 | mol:protein length:445 TUBULIN BETA-2B CHAIN |
| blastp_pdb | 2p4n_B | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.21 | 0.0 | mol:protein length:445 Tubulin beta chain |
| blastp_uniprot_sprot | sp|Q40106|TBB2_LUPAL | 1 | 443 | + | 443 | none | 98.88 | 448 | 97.52 | 0.0 | Tubulin beta-2 chain OS Lupinus albus GN TUBB2 PE 3 SV 1 |
| blastp_uniprot_sprot | sp|P37392|TBB1_LUPAL | 1 | 443 | + | 443 | none | 99.11 | 447 | 97.07 | 0.0 | Tubulin beta-1 chain OS Lupinus albus GN TUBB1 PE 1 SV 1 |
| blastp_uniprot_sprot | sp|P29516|TBB8_ARATH | 1 | 444 | + | 444 | none | 98.89 | 449 | 96.85 | 0.0 | Tubulin beta-8 chain OS Arabidopsis thaliana GN TUBB8 PE 2 SV 2 |
| blastp_uniprot_sprot | sp|Q8H7U1|TBB2_ORYSJ | 1 | 441 | + | 441 | Gaps:1 | 98.88 | 447 | 97.06 | 0.0 | Tubulin beta-2 chain OS Oryza sativa subsp. japonica GN TUBB2 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|P12460|TBB2_SOYBN | 1 | 442 | + | 442 | none | 98.44 | 449 | 96.83 | 0.0 | Tubulin beta-2 chain OS Glycine max GN TUBB2 PE 1 SV 1 |
| blastp_uniprot_sprot | sp|Q9ASR0|TBB3_ARATH | 1 | 442 | + | 442 | Gaps:1 | 98.44 | 450 | 96.84 | 0.0 | Tubulin beta-3 chain OS Arabidopsis thaliana GN TUBB3 PE 2 SV 2 |
| blastp_uniprot_sprot | sp|P29501|TBB2_PEA | 3 | 441 | + | 439 | none | 98.21 | 447 | 96.81 | 0.0 | Tubulin beta-2 chain (Fragment) OS Pisum sativum GN TUBB2 PE 1 SV 1 |
| blastp_uniprot_sprot | sp|Q56YW9|TBB2_ARATH | 1 | 442 | + | 442 | Gaps:1 | 98.44 | 450 | 96.84 | 0.0 | Tubulin beta-2 chain OS Arabidopsis thaliana GN TUBB2 PE 2 SV 2 |
| blastp_uniprot_sprot | sp|P18025|TBB1_MAIZE | 1 | 430 | + | 430 | none | 96.41 | 446 | 97.21 | 0.0 | Tubulin beta-1 chain OS Zea mays GN TUBB1 PE 1 SV 1 |
| blastp_uniprot_sprot | sp|Q9ZPN9|TBB2_ELEIN | 1 | 442 | + | 442 | Gaps:4 | 99.55 | 448 | 95.96 | 0.0 | Tubulin beta-2 chain OS Eleusine indica GN TUBB2 PE 2 SV 1 |
36 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Gene3D | 1 | 263 | 263 | G3DSA:3.40.50.1440 | none | none | IPR003008 |
| SUPERFAMILY | 244 | 429 | 186 | SSF55307 | none | none | IPR008280 |
| Gene3D | 264 | 373 | 110 | G3DSA:3.30.1330.20 | none | none | IPR018316 |
| Gene3D | 374 | 430 | 57 | G3DSA:1.10.287.600 | none | none | IPR023123 |
| ProSitePatterns | 140 | 146 | 7 | PS00227 | none | Tubulin subunits alpha, beta, and gamma signature. | IPR017975 |
| SUPERFAMILY | 1 | 243 | 243 | SSF52490 | none | none | IPR003008 |
| SMART | 246 | 383 | 138 | SM00865 | none | Tubulin/FtsZ family, C-terminal domain | IPR018316 |
| Pfam | 261 | 382 | 122 | PF03953 | none | Tubulin C-terminal domain | IPR018316 |
| PANTHER | 1 | 441 | 441 | PTHR11588 | none | none | IPR000217 |
| PRINTS | 176 | 189 | 14 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 93 | 104 | 12 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 10 | 30 | 21 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 151 | 172 | 22 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 132 | 150 | 19 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 190 | 210 | 21 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 106 | 130 | 25 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 51 | 70 | 20 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 370 | 398 | 29 | PR01161 | none | Tubulin signature | IPR000217 |
| ProSitePatterns | 1 | 4 | 4 | PS00228 | "Reactome:REACT_152" | Tubulin-beta mRNA autoregulation signal. | IPR013838 |
| Coils | 408 | 439 | 32 | Coil | none | none | none |
| PANTHER | 1 | 441 | 441 | PTHR11588:SF66 | none | none | none |
| Pfam | 3 | 222 | 220 | PF00091 | none | Tubulin/FtsZ family, GTPase domain | IPR003008 |
| PRINTS | 245 | 258 | 14 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 108 | 126 | 19 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 377 | 388 | 12 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 311 | 329 | 19 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 41 | 58 | 18 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 230 | 239 | 10 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 212 | 224 | 13 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 412 | 430 | 19 | PR01163 | none | Beta-tubulin signature | IPR002453 |
7 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran2_2014_nPriLBD_3P | Qrob_Chr08 | 8 | v_5216_549 | v_11837_70 | 12,36 | 0 | 30,43 | lod | 2,5806 | 5,1 |
| Bourran2_2014_nSecLBD_A4 | Qrob_Chr07 | 7 | v_8327_222 | s_1A4WGY_363 | 16,04 | 0 | 44,69 | lod | 2,6373 | 6,5 |
| Bourran2_2014_nP_A4 | Qrob_Chr11 | 11 | s_1B58GB_1413 | s_1A5BYY_1671 | 11,15 | 0 | 42,38 | lod | 1,8913 | 4,5 |
| Bourran2_2015_nSeqBC_3P | Qrob_Chr11 | 11 | s_1DG9PM_867 | s_1BZ083_1312 | 26,06 | 25,47 | 27,72 | lod | 3.6 | 7.1 |
| Bourran2_2015_nEpis_A4 | Qrob_Chr09 | 9 | v_15847_485 | v_8329_369 | 34,94 | 34,88 | 37,45 | lod | 3.1 | 7 |
| Bourran2_2015_nEpiBC_A4 | Qrob_Chr07 | 7 | s_1DP9TW_798 | v_8128_173 | 22,61 | 22,14 | 22,73 | lod | 3.1 | 8.5 |
| Bourran2_2014_nEpiBC_A4 | Qrob_Chr07 | 7 | s_2FI9D9_500 | s_1AXDMJ_325 | 12,26 | 0 | 34,9 | lod | 2,2306 | 6,1 |
