Protein : Qrob_P0220130.2 Q. robur
Protein Identifier  ? Qrob_P0220130.2 Organism . Name  Quercus robur
Score  98.0 Score Type  egn
Protein Description  (M=2) PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASE II Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 240  
Kegg Orthology  K03013
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa010980mg 1 239 + 239 Gaps:11 100.00 228 75.00 6e-122 hypothetical protein
blastp_kegg lcl|pmum:103339307 1 239 + 239 Gaps:11 100.00 228 74.12 2e-120 DNA-directed RNA polymerase V subunit 5A
blastp_kegg lcl|tcc:TCM_024387 1 239 + 239 Gaps:11 100.00 228 74.56 8e-120 Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
blastp_kegg lcl|pxb:103937885 7 239 + 233 Gaps:11 99.56 229 73.25 1e-118 DNA-directed RNA polymerase V subunit 5A-like
blastp_kegg lcl|pxb:103932172 7 239 + 233 Gaps:11 99.56 229 73.25 1e-118 DNA-directed RNA polymerase V subunit 5A-like
blastp_kegg lcl|rcu:RCOM_0248850 1 239 + 239 Gaps:10 96.22 238 69.87 2e-114 DNA-directed RNA polymerase II putative
blastp_kegg lcl|fve:101294279 15 239 + 225 Gaps:6 97.33 225 71.23 2e-113 DNA-directed RNA polymerases I II and III subunit RPABC1-like isoform 1
blastp_kegg lcl|pop:POPTR_0016s03800g 2 239 + 238 Gaps:8 94.65 243 68.26 3e-113 POPTRDRAFT_777047 hypothetical protein
blastp_kegg lcl|mdm:103449855 7 239 + 233 Gaps:11 99.56 229 70.61 7e-113 DNA-directed RNA polymerase V subunit 5A
blastp_kegg lcl|vvi:100853213 1 239 + 239 Gaps:10 100.00 229 69.43 6e-112 DNA-directed RNA polymerases I II and III subunit RPABC1-like
blastp_pdb 4a93_E 29 236 + 208 Gaps:6 98.60 215 35.85 1e-33 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3m_E 29 236 + 208 Gaps:6 98.60 215 35.85 1e-33 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3l_E 29 236 + 208 Gaps:6 98.60 215 35.85 1e-33 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3k_E 29 236 + 208 Gaps:6 98.60 215 35.85 1e-33 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3j_E 29 236 + 208 Gaps:6 98.60 215 35.85 1e-33 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3i_E 29 236 + 208 Gaps:6 98.60 215 35.85 1e-33 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3g_E 29 236 + 208 Gaps:6 98.60 215 35.85 1e-33 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3f_E 29 236 + 208 Gaps:6 98.60 215 35.85 1e-33 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3e_E 29 236 + 208 Gaps:6 98.60 215 35.85 1e-33 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3d_E 29 236 + 208 Gaps:6 98.60 215 35.85 1e-33 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_uniprot_sprot sp|Q9M1J2|RPE5A_ARATH 13 239 + 227 Gaps:6 99.55 222 60.63 5e-98 DNA-directed RNA polymerase V subunit 5A OS Arabidopsis thaliana GN NRPE5A PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZVB9|RPD5B_ARATH 13 238 + 226 Gaps:10 99.08 218 56.94 4e-88 DNA-directed RNA polymerases IV and V subunit 5B OS Arabidopsis thaliana GN NRPD5B PE 1 SV 1
blastp_uniprot_sprot sp|Q9M1H8|RPE5C_ARATH 24 238 + 215 Gaps:6 89.70 233 44.98 4e-60 DNA-directed RNA polymerase V subunit 5C OS Arabidopsis thaliana GN NRPE5C PE 2 SV 1
blastp_uniprot_sprot sp|Q757H7|RPAB1_ASHGO 29 236 + 208 Gaps:6 98.60 215 35.85 3e-34 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN RPB5 PE 3 SV 1
blastp_uniprot_sprot sp|O81098|RPB5A_ARATH 35 238 + 204 Gaps:9 97.07 205 36.68 4e-33 DNA-directed RNA polymerases II and IV subunit 5A OS Arabidopsis thaliana GN NRPB5A PE 1 SV 1
blastp_uniprot_sprot sp|P20434|RPAB1_YEAST 29 236 + 208 Gaps:6 98.60 215 35.85 5e-33 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPB5 PE 1 SV 1
blastp_uniprot_sprot sp|Q9N5K2|RPAB1_CAEEL 35 238 + 204 Gaps:14 96.68 211 35.29 1e-32 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Caenorhabditis elegans GN rpb-5 PE 3 SV 1
blastp_uniprot_sprot sp|A8XGH1|RPAB1_CAEBR 35 238 + 204 Gaps:14 96.68 211 35.29 3e-32 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Caenorhabditis briggsae GN rpb-5 PE 3 SV 1
blastp_uniprot_sprot sp|Q6CA26|RPAB1_YARLI 33 236 + 204 Gaps:5 97.64 212 32.85 1e-30 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Yarrowia lipolytica (strain CLIB 122 / E 150) GN RPB5 PE 3 SV 1
blastp_uniprot_sprot sp|Q6BIJ0|RPAB1_DEBHA 44 236 + 193 Gaps:5 91.59 214 35.20 2e-30 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN RPB5 PE 3 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 92 92 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 164 239 76 SSF55287 none none IPR000783
Pfam 32 124 93 PF03871 none RNA polymerase Rpb5, N-terminal domain IPR005571
SUPERFAMILY 33 167 135 SSF53036 none none IPR005571
Phobius 93 112 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 30 238 209 PTHR10535 none none none
Gene3D 30 166 137 G3DSA:3.40.1340.10 none none IPR005571
ProDom 173 238 66 PD005155 none RNA POLYMERASE DNA-DIRECTED SUBUNIT NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION II H POLYPEPTIDE IPR000783
Gene3D 167 239 73 G3DSA:3.90.940.20 none none IPR000783
Pfam 166 239 74 PF01191 none RNA polymerase Rpb5, C-terminal domain IPR000783
Phobius 113 239 127 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PIRSF 28 239 212 PIRSF000747 none none IPR014381
PANTHER 30 238 209 PTHR10535:SF2 none none none

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8

0 Targeting