Protein : Qrob_P0216700.2 Q. robur
Protein Identifier  ? Qrob_P0216700.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR31375:SF13 - PECTIN LYASE-LIKE PROTEIN (PTHR31375:SF13) Code Enzyme  EC:3.2.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 479  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_021450 1 477 + 477 Gaps:23 100.00 500 75.80 0.0 Pectin lyase-like superfamily protein isoform 1
blastp_kegg lcl|pmum:103323239 1 477 + 477 Gaps:6 100.00 479 76.41 0.0 polygalacturonase At1g48100
blastp_kegg lcl|pper:PRUPE_ppa005391mg 16 477 + 462 Gaps:5 100.00 463 77.97 0.0 hypothetical protein
blastp_kegg lcl|fve:101294457 5 477 + 473 Gaps:23 99.38 487 74.59 0.0 polygalacturonase At1g48100-like
blastp_kegg lcl|mdm:103425269 1 477 + 477 Gaps:5 100.00 480 74.17 0.0 polygalacturonase At1g48100-like
blastp_kegg lcl|pvu:PHAVU_002G189400g 1 477 + 477 Gaps:5 99.79 479 75.10 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1002690 1 477 + 477 Gaps:6 100.00 479 76.62 0.0 Polygalacturonase precursor putative (EC:3.2.1.67)
blastp_kegg lcl|csv:101207227 7 477 + 471 Gaps:9 98.53 475 78.42 0.0 polygalacturonase At1g48100-like
blastp_kegg lcl|cmo:103497761 7 477 + 471 Gaps:11 98.53 475 78.42 0.0 polygalacturonase At1g48100
blastp_kegg lcl|gmx:100809979 1 477 + 477 Gaps:9 99.58 474 75.42 0.0 polygalacturonase At1g48100-like
blastp_pdb 1nhc_F 145 430 + 286 Gaps:20 82.74 336 28.42 6e-23 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_E 145 430 + 286 Gaps:20 82.74 336 28.42 6e-23 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_D 145 430 + 286 Gaps:20 82.74 336 28.42 6e-23 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_C 145 430 + 286 Gaps:20 82.74 336 28.42 6e-23 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_B 145 430 + 286 Gaps:20 82.74 336 28.42 6e-23 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_A 145 430 + 286 Gaps:20 82.74 336 28.42 6e-23 mol:protein length:336 Polygalacturonase I
blastp_pdb 2iq7_G 164 430 + 267 Gaps:31 77.88 339 31.44 1e-22 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_F 164 430 + 267 Gaps:31 77.88 339 31.44 1e-22 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_E 164 430 + 267 Gaps:31 77.88 339 31.44 1e-22 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_D 164 430 + 267 Gaps:31 77.88 339 31.44 1e-22 mol:protein length:339 endopolygalacturonase
blastp_uniprot_sprot sp|Q949Z1|PGLR4_ARATH 7 477 + 471 Gaps:8 98.74 475 69.30 0.0 Polygalacturonase At1g48100 OS Arabidopsis thaliana GN At1g48100 PE 2 SV 1
blastp_uniprot_sprot sp|P43212|PGLR2_CRYJA 82 437 + 356 Gaps:8 68.09 514 45.71 4e-104 Polygalacturonase OS Cryptomeria japonica PE 1 SV 1
blastp_uniprot_sprot sp|Q94AJ5|PGLR5_ARATH 82 463 + 382 Gaps:13 84.46 444 43.73 4e-101 Probable polygalacturonase At1g80170 OS Arabidopsis thaliana GN At1g80170 PE 1 SV 1
blastp_uniprot_sprot sp|Q7M1E7|PGLR2_CHAOB 79 471 + 393 Gaps:13 75.10 514 44.56 3e-98 Polygalacturonase OS Chamaecyparis obtusa PE 1 SV 1
blastp_uniprot_sprot sp|Q9FY19|PGLR2_JUNAS 82 437 + 356 Gaps:8 69.03 507 43.14 3e-93 Polygalacturonase OS Juniperus ashei GN JNA2 PE 1 SV 1
blastp_uniprot_sprot sp|Q02096|PGLR_PERAE 85 436 + 352 Gaps:13 74.24 462 44.02 1e-86 Polygalacturonase OS Persea americana PE 2 SV 1
blastp_uniprot_sprot sp|P35336|PGLR_ACTDE 79 446 + 368 Gaps:14 76.66 467 43.58 2e-86 Polygalacturonase OS Actinidia deliciosa PE 2 SV 1
blastp_uniprot_sprot sp|Q9SFB7|QRT2_ARATH 83 446 + 364 Gaps:16 81.09 439 42.42 7e-85 Polygalacturonase QRT2 OS Arabidopsis thaliana GN QRT2 PE 1 SV 2
blastp_uniprot_sprot sp|O23147|ADPG1_ARATH 85 430 + 346 Gaps:15 78.65 431 43.07 2e-83 Polygalacturonase ADPG1 OS Arabidopsis thaliana GN ADPG1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8RY29|ADPG2_ARATH 85 430 + 346 Gaps:15 78.29 433 42.48 7e-83 Polygalacturonase ADPG2 OS Arabidopsis thaliana GN ADPG2 PE 2 SV 2

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 22 467 446 PTHR31375 none none none
Gene3D 78 467 390 G3DSA:2.160.20.10 none none IPR012334
SMART 294 314 21 SM00710 none Parallel beta-helix repeats IPR006626
SMART 324 345 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 353 374 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 271 292 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 244 270 27 SM00710 none Parallel beta-helix repeats IPR006626
ProSitePatterns 301 314 14 PS00502 none Polygalacturonase active site. IPR000743
PANTHER 22 467 446 PTHR31375:SF13 none none none
Phobius 27 478 452 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 26 26 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 7 18 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 1 6 6 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 19 26 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Pfam 114 430 317 PF00295 none Glycosyl hydrolases family 28 IPR000743
SUPERFAMILY 79 476 398 SSF51126 none none IPR011050

1 Localization

Analysis Start End Length
SignalP_EUK 1 26 25

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 26   Secretory pathway 1 0.954 0.024 NON-PLANT 26