Protein : Qrob_P0216630.2 Q. robur
Protein Identifier  ? Qrob_P0216630.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR10997:SF29 - ARM REPEAT SUPERFAMILY PROTEIN (PTHR10997:SF29) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1097  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0008536 Ran GTPase binding Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000555mg 1 1095 + 1095 Gaps:12 99.91 1098 73.38 0.0 hypothetical protein
blastp_kegg lcl|pmum:103323247 1 1095 + 1095 Gaps:10 99.91 1100 73.16 0.0 uncharacterized LOC103323247
blastp_kegg lcl|pop:POPTR_0010s16250g 1 1094 + 1094 Gaps:10 99.82 1094 72.53 0.0 POPTRDRAFT_724002 hypothetical protein
blastp_kegg lcl|tcc:TCM_021463 1 1095 + 1095 Gaps:14 99.91 1088 72.31 0.0 ARM repeat superfamily protein
blastp_kegg lcl|cic:CICLE_v10004217mg 1 1095 + 1095 Gaps:9 100.00 1090 69.72 0.0 hypothetical protein
blastp_kegg lcl|cit:102623008 1 1095 + 1095 Gaps:9 100.00 1090 69.72 0.0 importin-8-like
blastp_kegg lcl|pxb:103940758 1 1094 + 1094 Gaps:15 100.00 1093 70.72 0.0 uncharacterized LOC103940758
blastp_kegg lcl|cam:101514827 2 1094 + 1093 Gaps:8 99.73 1102 68.70 0.0 uncharacterized LOC101514827
blastp_kegg lcl|gmx:100782006 2 1096 + 1095 Gaps:12 99.01 1110 67.61 0.0 uncharacterized LOC100782006
blastp_kegg lcl|pvu:PHAVU_003G119400g 2 1096 + 1095 Gaps:10 97.59 1120 67.34 0.0 hypothetical protein
blastp_uniprot_sprot sp|Q55CX9|IPO7_DICDI 3 649 + 647 Gaps:100 57.56 1065 24.47 1e-08 Probable importin-7 homolog OS Dictyostelium discoideum GN DDB_G0269860 PE 3 SV 1
rpsblast_cdd gnl|CDD|35216 1 383 + 383 Gaps:36 39.39 947 24.40 2e-15 COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning].
rpsblast_cdd gnl|CDD|35215 12 625 + 614 Gaps:88 59.38 970 21.18 2e-12 COG5656 SXM1 Importin protein involved in nuclear import [Posttranslational modification protein turnover chaperones].
rpsblast_kog gnl|CDD|37202 1 1084 + 1084 Gaps:124 83.07 1010 21.93 8e-26 KOG1991 KOG1991 KOG1991 Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|37203 5 428 + 424 Gaps:46 43.54 960 24.64 1e-19 KOG1992 KOG1992 KOG1992 Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|37204 6 373 + 368 Gaps:57 40.80 978 18.80 5e-08 KOG1993 KOG1993 KOG1993 Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|37043 965 1056 + 92 Gaps:10 5.87 1516 50.56 1e-07 KOG1832 KOG1832 KOG1832 HIV-1 Vpr-binding protein [Cell cycle control cell division chromosome partitioning].
rpsblast_kog gnl|CDD|36161 967 1051 + 85 Gaps:2 2.82 3015 34.12 9e-07 KOG0943 KOG0943 KOG0943 Predicted ubiquitin-protein ligase/hyperplastic discs protein HECT superfamily [Posttranslational modification protein turnover chaperones].

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 798 1096 299 PTHR10997:SF29 none none none
Coils 989 1010 22 Coil none none none
PANTHER 4 418 415 PTHR10997 none none none
PANTHER 446 632 187 PTHR10997 none none none
PANTHER 798 1096 299 PTHR10997 none none none
Pfam 24 91 68 PF03810 none Importin-beta N-terminal domain IPR001494
ProSiteProfiles 24 92 69 PS50166 none Importin-beta N-terminal domain profile. IPR001494
SMART 24 92 69 SM00913 none Importin-beta N-terminal domain IPR001494
SUPERFAMILY 834 1005 172 SSF48371 none none IPR016024
SUPERFAMILY 470 633 164 SSF48371 none none IPR016024
SUPERFAMILY 756 806 51 SSF48371 none none IPR016024
SUPERFAMILY 3 428 426 SSF48371 none none IPR016024
PANTHER 669 781 113 PTHR10997:SF29 none none none
Coils 356 377 22 Coil none none none
Coils 956 984 29 Coil none none none
PANTHER 4 418 415 PTHR10997:SF29 none none none
PANTHER 446 632 187 PTHR10997:SF29 none none none
Gene3D 1 630 630 G3DSA:1.25.10.10 none none IPR011989
PANTHER 669 781 113 PTHR10997 none none none

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting