Protein : Qrob_P0215910.2 Q. robur
Protein Identifier  ? Qrob_P0215910.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0054//KOG0055//KOG0056//KOG0057//KOG0058//KOG0060//KOG0061//KOG0065//KOG0927//KOG2355 - Multidrug resistance-associated protein/mitoxantrone resistance protein ABC superfamily [Secondary metabolites biosynthesis transport and catabolism]. // Multidrug/pheromone exporter ABC superfamily [Secondary metabolites biosynthesis transport and catabolism]. // Heavy metal exporter HMT1 ABC superfamily [Inorganic ion transport and metabolism]. // Mitochondrial Fe/S cluster exporter ABC superfamily [Intracellular trafficking secretion and vesicular transport]. // Peptide exporter ABC superfamily [Intracellular trafficking secretion and vesicular transport]. // Long-chain acyl-CoA transporter ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism General function prediction only]. // Transporter ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis transport and catabolism]. // Pleiotropic drug resistance proteins (PDR1-15) ABC superfamily [Secondary metabolites biosynthesis transport and catabolism]. // Predicted transporter (ABC superfamily) [General function prediction only]. // Predicted ABC-type transport ATPase component/CCR4 associated factor [General function prediction only Transcription]. Code Enzyme  EC:3.6.3.44
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1511  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0042626 ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10018482mg 1 1510 + 1510 Gaps:4 100.00 1510 80.86 0.0 hypothetical protein
blastp_kegg lcl|cit:102623173 1 1510 + 1510 Gaps:4 100.00 1510 80.79 0.0 ABC transporter C family member 14-like
blastp_kegg lcl|tcc:TCM_004638 1 1510 + 1510 Gaps:3 100.00 1509 79.99 0.0 Multidrug resistance-associated protein 4 isoform 1
blastp_kegg lcl|pper:PRUPE_ppa000182mg 12 1510 + 1499 Gaps:2 99.27 1508 79.89 0.0 hypothetical protein
blastp_kegg lcl|vvi:100253698 1 1510 + 1510 Gaps:3 100.00 1509 79.39 0.0 ABC transporter C family member 4-like
blastp_kegg lcl|pmum:103333923 12 1510 + 1499 Gaps:2 99.27 1508 79.63 0.0 ABC transporter C family member 14
blastp_kegg lcl|rcu:RCOM_1177870 1 1510 + 1510 Gaps:8 100.00 1506 79.15 0.0 multidrug resistance-associated protein 2 6 (mrp2 6) abc-transoprter putative (EC:1.3.1.74)
blastp_kegg lcl|pxb:103934126 1 1510 + 1510 Gaps:3 100.00 1509 78.26 0.0 ABC transporter C family member 14-like
blastp_kegg lcl|mdm:103432582 1 1510 + 1510 Gaps:3 100.00 1509 78.26 0.0 ABC transporter C family member 14-like
blastp_kegg lcl|pxb:103934154 1 1510 + 1510 Gaps:3 100.00 1509 78.20 0.0 ABC transporter C family member 14-like
blastp_pdb 2cbz_A 644 1505 + 862 Gaps:19 96.62 237 55.02 2e-63 mol:protein length:237 MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1
blastp_pdb 2pze_B 647 1480 + 834 Gaps:19 95.20 229 51.83 9e-50 mol:protein length:229 Cystic fibrosis transmembrane conductance reg
blastp_pdb 2pze_A 647 1480 + 834 Gaps:19 95.20 229 51.83 9e-50 mol:protein length:229 Cystic fibrosis transmembrane conductance reg
blastp_pdb 2pzg_B 647 1480 + 834 Gaps:19 90.46 241 51.83 1e-49 mol:protein length:241 Cystic fibrosis transmembrane conductance reg
blastp_pdb 2pzg_A 647 1480 + 834 Gaps:19 90.46 241 51.83 1e-49 mol:protein length:241 Cystic fibrosis transmembrane conductance reg
blastp_pdb 3gd7_D 657 1494 + 838 Gaps:20 59.74 390 48.93 2e-49 mol:protein length:390 Fusion complex of Cystic fibrosis transmembra
blastp_pdb 3gd7_C 657 1494 + 838 Gaps:20 59.74 390 48.93 2e-49 mol:protein length:390 Fusion complex of Cystic fibrosis transmembra
blastp_pdb 3gd7_B 657 1494 + 838 Gaps:20 59.74 390 48.93 2e-49 mol:protein length:390 Fusion complex of Cystic fibrosis transmembra
blastp_pdb 3gd7_A 657 1494 + 838 Gaps:20 59.74 390 48.93 2e-49 mol:protein length:390 Fusion complex of Cystic fibrosis transmembra
blastp_pdb 1r10_B 659 1480 + 822 Gaps:20 76.57 286 51.14 7e-49 mol:protein length:286 Cystic fibrosis transmembrane conductance reg
blastp_uniprot_sprot sp|Q7DM58|AB4C_ARATH 1 1510 + 1510 Gaps:33 99.80 1516 70.13 0.0 ABC transporter C family member 4 OS Arabidopsis thaliana GN ABCC4 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LZJ5|AB14C_ARATH 29 1510 + 1482 Gaps:44 98.12 1539 70.40 0.0 ABC transporter C family member 14 OS Arabidopsis thaliana GN ABCC14 PE 1 SV 1
blastp_uniprot_sprot sp|Q7GB25|AB5C_ARATH 116 1510 + 1395 Gaps:63 92.47 1514 44.71 0.0 ABC transporter C family member 5 OS Arabidopsis thaliana GN ABCC5 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LK64|AB3C_ARATH 128 1508 + 1381 Gaps:39 92.21 1514 43.12 0.0 ABC transporter C family member 3 OS Arabidopsis thaliana GN ABCC3 PE 1 SV 1
blastp_uniprot_sprot sp|Q8VZZ4|AB6C_ARATH 98 1507 + 1410 Gaps:38 95.36 1466 42.70 0.0 ABC transporter C family member 6 OS Arabidopsis thaliana GN ABCC6 PE 2 SV 3
blastp_uniprot_sprot sp|Q9M1C7|AB9C_ARATH 19 1508 + 1490 Gaps:49 98.87 1506 39.76 0.0 ABC transporter C family member 9 OS Arabidopsis thaliana GN ABCC9 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LK62|AB7C_ARATH 151 1507 + 1357 Gaps:45 90.56 1493 42.31 0.0 ABC transporter C family member 7 OS Arabidopsis thaliana GN ABCC7 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LYS2|AB10C_ARATH 240 1503 + 1264 Gaps:39 87.06 1453 42.21 0.0 ABC transporter C family member 10 OS Arabidopsis thaliana GN ABCC10 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LGU1|AB8C_ARATH 38 1503 + 1466 Gaps:70 97.81 1464 39.87 0.0 ABC transporter C family member 8 OS Arabidopsis thaliana GN ABCC8 PE 2 SV 3
blastp_uniprot_sprot sp|Q7FB56|AB15C_ARATH 432 1508 + 1077 Gaps:40 99.05 1053 45.35 0.0 Putative ABC transporter C family member 15 OS Arabidopsis thaliana GN ABCC15 PE 5 SV 2

64 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 490 555 66 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 645 868 224 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
Phobius 43 62 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 465 469 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 643 866 224 SSF52540 none none IPR027417
Phobius 1179 1199 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 946 972 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 95 120 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 204 221 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 4 14 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 392 445 54 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 63 94 32 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1007 1017 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 15 19 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 162 184 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1200 1210 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 556 578 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1059 1079 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 19 19 SIGNAL_PEPTIDE none Signal peptide region none
ProSitePatterns 770 784 15 PS00211 none ABC transporters family signature. IPR017871
Phobius 446 464 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 984 1006 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 330 351 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1018 1038 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 352 370 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1080 1084 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 222 329 108 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 91 203 113 PTHR24223 none none none
Phobius 185 203 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 371 391 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

17 Localization

Analysis Start End Length
TMHMM 1172 1194 22
TMHMM 1021 1038 17
TMHMM 989 1011 22
TMHMM 44 62 18
TMHMM 332 354 22
TMHMM 446 463 17
TMHMM 167 189 22
TMHMM 1085 1107 22
TMHMM 555 577 22
TMHMM 369 391 22
TMHMM 204 221 17
TMHMM 133 150 17
TMHMM 1059 1081 22
TMHMM 467 489 22
TMHMM 101 123 22
TMHMM 1209 1231 22
TMHMM 946 968 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 19   Secretory pathway 3 0.618 0.142 NON-PLANT 19