Protein : Qrob_P0215880.2 Q. robur
Protein Identifier  ? Qrob_P0215880.2 Organism . Name  Quercus robur
Score  79.2 Score Type  egn
Protein Description  (M=2) K12623 - U6 snRNA-associated Sm-like protein LSm4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 137  
Kegg Orthology  K12623
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cam:101511529 1 109 + 109 none 72.67 150 94.50 2e-64 probable U6 snRNA-associated Sm-like protein LSm4-like
blastp_kegg lcl|tcc:TCM_004631 1 106 + 106 none 71.14 149 97.17 2e-63 Small nuclear ribonucleoprotein family protein isoform 1
blastp_kegg lcl|cic:CICLE_v10002769mg 1 106 + 106 none 70.67 150 97.17 9e-63 hypothetical protein
blastp_kegg lcl|cit:102613630 1 106 + 106 none 70.67 150 97.17 9e-63 probable U6 snRNA-associated Sm-like protein LSm4-like
blastp_kegg lcl|vvi:100241738 1 106 + 106 none 70.67 150 94.34 1e-60 probable U6 snRNA-associated Sm-like protein LSm4-like
blastp_kegg lcl|cam:101496854 1 130 + 130 none 70.27 185 89.23 8e-60 probable U6 snRNA-associated Sm-like protein LSm4-like
blastp_kegg lcl|fve:101304156 1 106 + 106 Gaps:2 71.62 148 89.62 8e-59 probable U6 snRNA-associated Sm-like protein LSm4-like
blastp_kegg lcl|cic:CICLE_v10022685mg 1 110 + 110 none 73.33 150 96.36 9e-59 hypothetical protein
blastp_kegg lcl|cit:102620919 1 110 + 110 none 73.33 150 96.36 9e-59 probable U6 snRNA-associated Sm-like protein LSm4-like
blastp_kegg lcl|mus:103987176 1 110 + 110 Gaps:2 74.32 148 90.91 2e-57 probable U6 snRNA-associated Sm-like protein LSm4
blastp_pdb 3pgw_W 4 87 + 84 Gaps:4 63.49 126 36.25 3e-06 mol:protein length:126 Sm-D3
blastp_pdb 3pgw_Z 4 87 + 84 Gaps:4 63.49 126 36.25 3e-06 mol:protein length:126 Sm-D3
blastp_pdb 2y9d_R 4 87 + 84 Gaps:4 63.49 126 36.25 3e-06 mol:protein length:126 SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3
blastp_pdb 2y9d_K 4 87 + 84 Gaps:4 63.49 126 36.25 3e-06 mol:protein length:126 SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3
blastp_pdb 2y9d_D 4 87 + 84 Gaps:4 63.49 126 36.25 3e-06 mol:protein length:126 SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3
blastp_pdb 2y9c_R 4 87 + 84 Gaps:4 63.49 126 36.25 3e-06 mol:protein length:126 SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3
blastp_pdb 2y9c_K 4 87 + 84 Gaps:4 63.49 126 36.25 3e-06 mol:protein length:126 SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3
blastp_pdb 2y9c_D 4 87 + 84 Gaps:4 63.49 126 36.25 3e-06 mol:protein length:126 SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3
blastp_pdb 2y9b_R 4 87 + 84 Gaps:4 63.49 126 36.25 3e-06 mol:protein length:126 SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3
blastp_pdb 2y9b_K 4 87 + 84 Gaps:4 63.49 126 36.25 3e-06 mol:protein length:126 SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3
blastp_uniprot_sprot sp|Q43582|LSM4_TOBAC 1 106 + 106 Gaps:1 73.29 146 89.72 3e-66 Probable U6 snRNA-associated Sm-like protein LSm4 OS Nicotiana tabacum PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZRU9|LSM4_FAGSY 1 125 + 125 none 84.46 148 81.60 2e-58 Probable U6 snRNA-associated Sm-like protein LSm4 OS Fagus sylvatica GN LSM4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LGE6|LSM4_ORYSJ 1 106 + 106 Gaps:5 71.43 147 91.43 2e-48 Probable U6 snRNA-associated Sm-like protein LSm4 OS Oryza sativa subsp. japonica GN Os01g0256900 PE 2 SV 1
blastp_uniprot_sprot sp|Q9QXA5|LSM4_MOUSE 1 98 + 98 Gaps:14 61.31 137 79.76 3e-41 U6 snRNA-associated Sm-like protein LSm4 OS Mus musculus GN Lsm4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9Y4Z0|LSM4_HUMAN 1 72 + 72 none 51.80 139 80.56 4e-40 U6 snRNA-associated Sm-like protein LSm4 OS Homo sapiens GN LSM4 PE 1 SV 1
blastp_uniprot_sprot sp|Q3ZBK6|LSM4_BOVIN 1 72 + 72 none 51.80 139 80.56 4e-40 U6 snRNA-associated Sm-like protein LSm4 OS Bos taurus GN LSM4 PE 2 SV 1
blastp_uniprot_sprot sp|Q54KX4|LSM4_DICDI 1 95 + 95 none 53.67 177 61.05 2e-34 Probable U6 snRNA-associated Sm-like protein LSm4 OS Dictyostelium discoideum GN lsm4 PE 3 SV 1
blastp_uniprot_sprot sp|O14352|LSM4_SCHPO 1 68 + 68 none 56.20 121 67.65 6e-29 Probable U6 snRNA-associated Sm-like protein LSm4 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN lsm4 PE 1 SV 1
blastp_uniprot_sprot sp|Q19952|LSM4_CAEEL 1 129 + 129 Gaps:21 87.80 123 60.19 3e-23 Probable U6 snRNA-associated Sm-like protein LSm4 OS Caenorhabditis elegans GN lsm-4 PE 3 SV 1
blastp_uniprot_sprot sp|P40070|LSM4_YEAST 1 90 + 90 Gaps:10 53.48 187 34.00 5e-11 U6 snRNA-associated Sm-like protein LSm4 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN LSM4 PE 1 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 1 114 114 SSF50182 none none IPR010920
SMART 1 57 57 SM00651 none snRNP Sm proteins IPR006649
Pfam 2 55 54 PF01423 none LSM domain IPR001163
Gene3D 1 59 59 G3DSA:2.30.30.100 none none none
PANTHER 1 136 136 PTHR23338:SF16 none none none
PANTHER 1 136 136 PTHR23338 none none IPR027141

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

0 Targeting