Protein : Qrob_P0213800.2 Q. robur
Protein Identifier  ? Qrob_P0213800.2 Organism . Name  Quercus robur
Score  3.4 Score Type  egn
Protein Description  (M=1) PTHR13068//PTHR13068:SF14 - CGI-12 PROTEIN-RELATED // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 347  
Kegg Orthology  K15032
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003690 double-stranded DNA binding Interacting selectively and non-covalently with double-stranded DNA.
GO:0005739 mitochondrion A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

13 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103341708 49 335 + 287 Gaps:8 81.82 341 75.99 8e-149 uncharacterized LOC103341708
blastp_kegg lcl|vvi:100254596 4 338 + 335 Gaps:18 98.81 335 67.67 3e-147 uncharacterized LOC100254596
blastp_kegg lcl|pxb:103941563 31 335 + 305 Gaps:16 83.77 345 74.05 2e-146 uncharacterized LOC103941563
blastp_kegg lcl|pxb:103961706 67 335 + 269 Gaps:1 82.07 329 75.19 6e-146 uncharacterized LOC103961706
blastp_kegg lcl|tcc:TCM_022856 81 337 + 257 Gaps:2 77.18 333 78.21 2e-144 Mitochondrial transcription termination factor family protein
blastp_kegg lcl|mdm:103449518 67 335 + 269 Gaps:1 90.91 297 75.19 3e-144 uncharacterized LOC103449518
blastp_kegg lcl|pop:POPTR_1173s00200g 3 337 + 335 Gaps:29 97.44 351 66.37 1e-142 hypothetical protein
blastp_kegg lcl|pop:POPTR_0016s07290g 7 343 + 337 Gaps:28 98.02 354 64.84 4e-142 POPTRDRAFT_256344 hypothetical protein
blastp_kegg lcl|cit:102618922 81 336 + 256 Gaps:1 75.89 336 77.65 2e-141 uncharacterized LOC102618922
blastp_kegg lcl|cic:CICLE_v10012147mg 81 336 + 256 Gaps:1 75.89 336 77.25 2e-140 hypothetical protein
rpsblast_cdd gnl|CDD|202273 131 312 + 182 Gaps:10 54.49 345 30.32 2e-27 pfam02536 mTERF mTERF. This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers.
rpsblast_cdd gnl|CDD|178738 87 318 + 232 Gaps:36 71.87 487 37.71 6e-24 PLN03196 PLN03196 MOC1-like protein Provisional.
rpsblast_kog gnl|CDD|36481 166 297 + 132 Gaps:3 31.23 413 34.11 7e-18 KOG1267 KOG1267 KOG1267 Mitochondrial transcription termination factor mTERF [Transcription General function prediction only].

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 81 332 252 PTHR13068:SF14 none none none
PANTHER 81 332 252 PTHR13068 none none none
SMART 96 127 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 267 298 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 234 266 33 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 168 199 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 132 163 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 200 229 30 SM00733 none Mitochondrial termination factor repeats IPR003690
Pfam 211 313 103 PF02536 none mTERF IPR003690

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 33   Mitochondrion 4 0.031 0.637 NON-PLANT 33