Protein : Qrob_P0212440.2 Q. robur
Protein Identifier  ? Qrob_P0212440.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=8) 3.1.1.26 - Galactolipase. Code Enzyme  EC:3.1.1.26
Gene Prediction Quality  validated Protein length 

Sequence

Length: 353  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0006629 lipid metabolic process The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100257463 1 344 + 344 Gaps:9 85.47 413 63.74 4e-155 patatin group A-3-like
blastp_kegg lcl|vvi:100266120 1 344 + 344 Gaps:9 87.16 444 65.12 7e-155 patatin-T5-like
blastp_kegg lcl|vvi:100252222 1 344 + 344 Gaps:9 85.47 413 63.46 2e-153 patatin group A-3-like
blastp_kegg lcl|pop:POPTR_1581s00200g 2 344 + 343 Gaps:7 86.85 403 63.43 4e-153 hypothetical protein
blastp_kegg lcl|vvi:100241962 1 344 + 344 Gaps:9 83.06 425 62.89 5e-153 patatin group A-3-like
blastp_kegg lcl|pop:POPTR_0002s12950g 2 344 + 343 Gaps:7 86.42 405 62.57 5e-152 POPTRDRAFT_551871 patatin-like family protein
blastp_kegg lcl|pop:POPTR_0014s03290g 2 344 + 343 Gaps:7 83.93 417 61.14 2e-150 hypothetical protein
blastp_kegg lcl|pop:POPTR_0014s03320g 2 337 + 336 Gaps:7 82.25 417 62.10 2e-150 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1591460 1 344 + 344 Gaps:9 85.89 411 61.47 8e-150 Patatin T5 precursor putative
blastp_kegg lcl|pper:PRUPE_ppa015844mg 2 344 + 343 Gaps:9 85.85 410 62.22 8e-150 hypothetical protein
blastp_pdb 1oxw_C 1 344 + 344 Gaps:35 87.67 373 41.59 5e-76 mol:protein length:373 Patatin
blastp_pdb 1oxw_B 1 344 + 344 Gaps:35 87.67 373 41.59 5e-76 mol:protein length:373 Patatin
blastp_pdb 1oxw_A 1 344 + 344 Gaps:35 87.67 373 41.59 5e-76 mol:protein length:373 Patatin
blastp_uniprot_sprot sp|P15478|PATT5_SOLTU 1 344 + 344 Gaps:35 84.72 386 44.04 4e-81 Patatin-T5 OS Solanum tuberosum PE 1 SV 1
blastp_uniprot_sprot sp|Q2MY51|PATM3_SOLTU 2 344 + 343 Gaps:35 84.46 386 42.94 6e-78 Patatin group M-3 OS Solanum tuberosum PE 2 SV 1
blastp_uniprot_sprot sp|Q3YJT5|PAT05_SOLTU 2 344 + 343 Gaps:36 84.50 387 44.04 7e-78 Patatin-05 OS Solanum tuberosum GN pat1-k1 PE 1 SV 1
blastp_uniprot_sprot sp|Q2MY44|PAT07_SOLTU 2 344 + 343 Gaps:37 84.46 386 43.87 9e-78 Patatin-07 OS Solanum tuberosum PE 2 SV 1
blastp_uniprot_sprot sp|Q2MY37|PAT14_SOLTU 2 344 + 343 Gaps:35 84.46 386 42.64 1e-77 Patatin-14 OS Solanum tuberosum PE 2 SV 1
blastp_uniprot_sprot sp|Q2MY48|PAT03_SOLTU 2 344 + 343 Gaps:36 84.50 387 43.73 2e-77 Patatin-03 OS Solanum tuberosum PE 2 SV 1
blastp_uniprot_sprot sp|Q2MY52|PATM2_SOLTU 2 344 + 343 Gaps:35 84.46 386 42.64 2e-77 Patatin group M-2 OS Solanum tuberosum PE 2 SV 1
blastp_uniprot_sprot sp|P11768|PATM1_SOLTU 2 344 + 343 Gaps:35 84.46 386 42.64 2e-77 Patatin group M-1 OS Solanum tuberosum PE 2 SV 1
blastp_uniprot_sprot sp|Q2MY41|PAT10_SOLTU 2 344 + 343 Gaps:35 84.46 386 42.64 2e-77 Patatin-10 OS Solanum tuberosum PE 2 SV 1
blastp_uniprot_sprot sp|Q2MY40|PAT11_SOLTU 3 344 + 342 Gaps:34 84.24 387 42.64 2e-77 Patatin-11 OS Solanum tuberosum PE 2 SV 1
rpsblast_cdd gnl|CDD|132853 1 323 + 323 Gaps:9 93.98 349 56.10 1e-121 cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2 EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids glycolipids sulfolipids and mono- and diacylglycerols thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm small residue X any residue and Nu nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
rpsblast_cdd gnl|CDD|132854 5 319 + 315 Gaps:21 91.79 329 38.41 1e-53 cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2 EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids glycolipids sulfolipids and mono- and diacylglycerols thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm small residue X any residue and Nu nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
rpsblast_cdd gnl|CDD|132838 2 312 + 311 Gaps:75 94.57 258 36.89 4e-40 cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase includes PNPLA8 PNPLA9 and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2 EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids glycolipids sulfolipids and mono- and diacylglycerols thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm small residue X any residue and Nu nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
rpsblast_cdd gnl|CDD|33420 5 322 + 318 Gaps:40 79.19 394 25.00 7e-22 COG3621 COG3621 Patatin [General function prediction only].
rpsblast_cdd gnl|CDD|132852 24 310 + 287 Gaps:64 86.46 288 29.32 1e-17 cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2 EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids glycolipids sulfolipids and mono- and diacylglycerols thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm small residue X any residue and Nu nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
rpsblast_cdd gnl|CDD|132856 5 255 + 251 Gaps:46 70.06 344 28.63 1e-13 cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2 EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids glycolipids sulfolipids and mono- and diacylglycerols thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm small residue X any residue and Nu nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
rpsblast_cdd gnl|CDD|201943 17 192 + 176 Gaps:19 89.42 189 21.30 2e-12 pfam01734 Patatin Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 12 192 181 PF01734 none Patatin-like phospholipase IPR002641
Gene3D 2 345 344 G3DSA:3.40.1090.10 none none none
SUPERFAMILY 2 323 322 SSF52151 none none IPR016035
PANTHER 1 352 352 PTHR32176 none none none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting