Protein : Qrob_P0211100.2 Q. robur
Protein Identifier  ? Qrob_P0211100.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K12396 - AP-3 complex subunit delta-1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 979  
Kegg Orthology  K12396
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0015031 protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0005794 Golgi apparatus A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
GO:0008565 protein transporter activity Enables the directed movement of proteins into, out of or within a cell, or between cells.
GO:0030117 membrane coat Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103937280 4 978 + 975 Gaps:17 99.90 971 72.16 0.0 AP-3 complex subunit delta-like
blastp_kegg lcl|pxb:103950634 4 978 + 975 Gaps:17 99.90 971 72.16 0.0 AP-3 complex subunit delta-like
blastp_kegg lcl|mdm:103455510 4 978 + 975 Gaps:17 99.90 971 71.55 0.0 AP-3 complex subunit delta-like
blastp_kegg lcl|pmum:103338772 4 978 + 975 Gaps:15 99.90 975 71.46 0.0 AP-3 complex subunit delta
blastp_kegg lcl|fve:101292417 4 978 + 975 Gaps:19 99.90 963 71.52 0.0 AP-3 complex subunit delta-like
blastp_kegg lcl|pxb:103938994 4 978 + 975 Gaps:16 99.90 960 72.05 0.0 AP-3 complex subunit delta-like
blastp_kegg lcl|pper:PRUPE_ppa000873mg 4 978 + 975 Gaps:14 99.90 974 71.12 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10018705mg 4 978 + 975 Gaps:4 99.90 978 70.42 0.0 hypothetical protein
blastp_kegg lcl|cit:102611509 4 978 + 975 Gaps:4 99.90 978 70.32 0.0 AP-3 complex subunit delta-like
blastp_kegg lcl|mdm:103438014 4 978 + 975 Gaps:16 99.90 960 71.95 0.0 AP-3 complex subunit delta-like
blastp_pdb 1w63_K 31 481 + 451 Gaps:52 74.60 618 24.30 3e-23 mol:protein length:618 ADAPTER-RELATED PROTEIN COMPLEX 1 GAMMA 1 SUB
blastp_pdb 1w63_I 31 481 + 451 Gaps:52 74.60 618 24.30 3e-23 mol:protein length:618 ADAPTER-RELATED PROTEIN COMPLEX 1 GAMMA 1 SUB
blastp_pdb 1w63_G 31 481 + 451 Gaps:52 74.60 618 24.30 3e-23 mol:protein length:618 ADAPTER-RELATED PROTEIN COMPLEX 1 GAMMA 1 SUB
blastp_pdb 1w63_E 31 481 + 451 Gaps:52 74.60 618 24.30 3e-23 mol:protein length:618 ADAPTER-RELATED PROTEIN COMPLEX 1 GAMMA 1 SUB
blastp_pdb 1w63_C 31 481 + 451 Gaps:52 74.60 618 24.30 3e-23 mol:protein length:618 ADAPTER-RELATED PROTEIN COMPLEX 1 GAMMA 1 SUB
blastp_pdb 1w63_A 31 481 + 451 Gaps:52 74.60 618 24.30 3e-23 mol:protein length:618 ADAPTER-RELATED PROTEIN COMPLEX 1 GAMMA 1 SUB
blastp_pdb 2jkt_L 35 481 + 447 Gaps:52 76.24 623 24.21 1e-21 mol:protein length:623 AP-2 COMPLEX SUBUNIT ALPHA-2
blastp_pdb 2jkt_A 35 481 + 447 Gaps:52 76.24 623 24.21 1e-21 mol:protein length:623 AP-2 COMPLEX SUBUNIT ALPHA-2
blastp_pdb 2jkr_L 35 481 + 447 Gaps:52 76.24 623 24.21 1e-21 mol:protein length:623 AP-2 COMPLEX SUBUNIT ALPHA-2
blastp_pdb 2jkr_A 35 481 + 447 Gaps:52 76.24 623 24.21 1e-21 mol:protein length:623 AP-2 COMPLEX SUBUNIT ALPHA-2
blastp_uniprot_sprot sp|Q9C744|AP3D_ARATH 1 978 + 978 Gaps:82 98.27 869 64.40 0.0 AP-3 complex subunit delta OS Arabidopsis thaliana GN DELTA-ADR PE 1 SV 1
blastp_uniprot_sprot sp|O14617|AP3D1_HUMAN 9 550 + 542 Gaps:19 47.44 1153 39.31 4e-127 AP-3 complex subunit delta-1 OS Homo sapiens GN AP3D1 PE 1 SV 1
blastp_uniprot_sprot sp|O54774|AP3D1_MOUSE 9 546 + 538 Gaps:22 45.04 1199 39.26 2e-124 AP-3 complex subunit delta-1 OS Mus musculus GN Ap3d1 PE 1 SV 1
blastp_uniprot_sprot sp|Q865S1|AP3D1_BOVIN 9 546 + 538 Gaps:22 44.74 1207 39.81 2e-124 AP-3 complex subunit delta-1 OS Bos taurus GN AP3D1 PE 1 SV 2
blastp_uniprot_sprot sp|Q54WN0|AP3D_DICDI 12 519 + 508 Gaps:7 44.53 1143 40.08 3e-120 AP-3 complex subunit delta OS Dictyostelium discoideum GN ap3d1 PE 3 SV 1
blastp_uniprot_sprot sp|P54362|AP3D_DROME 6 519 + 514 Gaps:16 50.29 1034 37.88 9e-111 AP-3 complex subunit delta OS Drosophila melanogaster GN g PE 1 SV 4
blastp_uniprot_sprot sp|Q9UTL8|AP3D_SCHPO 12 533 + 522 Gaps:22 64.48 825 36.65 4e-89 AP-3 complex subunit delta OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN apl5 PE 3 SV 2
blastp_uniprot_sprot sp|Q755A1|AP3D_ASHGO 12 518 + 507 Gaps:39 58.73 899 33.14 7e-77 AP-3 complex subunit delta OS Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN APL5 PE 3 SV 1
blastp_uniprot_sprot sp|Q08951|AP3D_YEAST 12 519 + 508 Gaps:46 57.73 932 32.16 4e-76 AP-3 complex subunit delta OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN APL5 PE 1 SV 1
blastp_uniprot_sprot sp|Q8I8U2|AP1G_DICDI 17 393 + 377 Gaps:29 44.47 895 26.88 6e-31 AP-1 complex subunit gamma OS Dictyostelium discoideum GN ap1g1 PE 1 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 33 495 463 PF01602 none Adaptin N terminal region IPR002553
PANTHER 1 617 617 PTHR22781 none none none
PANTHER 675 813 139 PTHR22781 none none none
Gene3D 616 664 49 G3DSA:1.25.10.10 none none IPR011989
Gene3D 9 522 514 G3DSA:1.25.10.10 none none IPR011989
SUPERFAMILY 621 649 29 SSF48371 none none IPR016024
SUPERFAMILY 32 521 490 SSF48371 none none IPR016024
PIRSF 1 971 971 PIRSF037092 none none IPR017105

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting