Protein : Qrob_P0208720.2 Q. robur

Protein Identifier  ? Qrob_P0208720.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=5) 1.1.1.25 - Shikimate dehydrogenase. Code Enzyme  EC:1.1.1.25, EC:4.2.1.10
Gene Prediction Quality  validated Protein length 

Sequence

Length: 531  
Kegg Orthology  K13832

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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0050661 NADP binding Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
GO:0003855 3-dehydroquinate dehydratase activity Catalysis of the reaction: 3-dehydroquinate = 3-dehydroshikimate + H(2)O.
GO:0004764 shikimate 3-dehydrogenase (NADP+) activity Catalysis of the reaction: shikimate + NADP+ = 3-dehydroshikimate + NADPH + H+.
GO:0019632 shikimate metabolic process The chemical reactions and pathways involving shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid. It is an important intermediate in the biosynthesis of aromatic amino acids.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101311774 1 530 + 530 none 100.00 530 88.30 0.0 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase chloroplastic-like
blastp_kegg lcl|rcu:RCOM_1429650 8 530 + 523 Gaps:1 100.00 524 88.17 0.0 shikimate dehydrogenase putative (EC:1.1.1.25 4.2.1.10)
blastp_kegg lcl|vvi:100248678 1 530 + 530 Gaps:1 100.00 531 86.63 0.0 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase chloroplastic-like
blastp_kegg lcl|tcc:TCM_025936 14 478 + 465 Gaps:7 97.26 475 83.77 0.0 Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
blastp_kegg lcl|pmum:103344710 5 529 + 525 Gaps:2 98.68 532 69.90 0.0 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase chloroplastic-like
blastp_kegg lcl|vvi:100243536 1 529 + 529 Gaps:3 99.44 531 70.27 0.0 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase chloroplastic-like
blastp_kegg lcl|vvi:100242676 15 526 + 512 Gaps:4 98.85 522 69.57 0.0 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase chloroplastic-like
blastp_kegg lcl|pmum:103342765 11 527 + 517 none 97.18 532 69.83 0.0 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase chloroplastic-like
blastp_kegg lcl|mdm:103436731 11 530 + 520 Gaps:2 96.49 541 67.62 0.0 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase chloroplastic-like
blastp_kegg lcl|pper:PRUPE_ppa004026mg 11 530 + 520 Gaps:1 97.38 535 69.10 0.0 hypothetical protein
blastp_pdb 2o7s_A 21 529 + 509 Gaps:3 97.90 523 66.41 0.0 mol:protein length:523 Bifunctional 3-dehydroquinate dehydratase/shi
blastp_pdb 2o7q_A 21 529 + 509 Gaps:3 97.90 523 66.41 0.0 mol:protein length:523 Bifunctional 3-dehydroquinate dehydratase/shi
blastp_pdb 2gpt_A 21 529 + 509 Gaps:3 97.90 523 66.41 0.0 mol:protein length:523 3-dehydroquinate dehydratase/ shikimate 5-deh
blastp_pdb 2hk8_H 247 518 + 272 Gaps:28 95.17 269 39.06 2e-42 mol:protein length:269 Shikimate dehydrogenase
blastp_pdb 2hk8_G 247 518 + 272 Gaps:28 95.17 269 39.06 2e-42 mol:protein length:269 Shikimate dehydrogenase
blastp_pdb 2hk8_F 247 518 + 272 Gaps:28 95.17 269 39.06 2e-42 mol:protein length:269 Shikimate dehydrogenase
blastp_pdb 2hk8_E 247 518 + 272 Gaps:28 95.17 269 39.06 2e-42 mol:protein length:269 Shikimate dehydrogenase
blastp_pdb 2hk8_D 247 518 + 272 Gaps:28 95.17 269 39.06 2e-42 mol:protein length:269 Shikimate dehydrogenase
blastp_pdb 2hk8_C 247 518 + 272 Gaps:28 95.17 269 39.06 2e-42 mol:protein length:269 Shikimate dehydrogenase
blastp_pdb 2hk8_B 247 518 + 272 Gaps:28 95.17 269 39.06 2e-42 mol:protein length:269 Shikimate dehydrogenase
blastp_uniprot_sprot sp|Q9SQT8|DHQSD_ARATH 9 529 + 521 Gaps:3 86.90 603 64.89 0.0 Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase chloroplastic OS Arabidopsis thaliana GN EMB3004 PE 1 SV 1
blastp_uniprot_sprot sp|Q6HDI8|AROE_BACHK 253 526 + 274 Gaps:17 97.11 277 38.29 5e-50 Shikimate dehydrogenase OS Bacillus thuringiensis subsp. konkukian (strain 97-27) GN aroE PE 3 SV 1
blastp_uniprot_sprot sp|B7JNW6|AROE_BACC0 253 526 + 274 Gaps:17 97.11 277 38.29 6e-50 Shikimate dehydrogenase OS Bacillus cereus (strain AH820) GN aroE PE 3 SV 1
blastp_uniprot_sprot sp|C3L5T8|AROE_BACAC 253 526 + 274 Gaps:17 97.11 277 38.29 9e-50 Shikimate dehydrogenase OS Bacillus anthracis (strain CDC 684 / NRRL 3495) GN aroE PE 3 SV 1
blastp_uniprot_sprot sp|Q634K8|AROE_BACCZ 253 526 + 274 Gaps:17 97.11 277 37.55 1e-49 Shikimate dehydrogenase OS Bacillus cereus (strain ZK / E33L) GN aroE PE 3 SV 1
blastp_uniprot_sprot sp|Q818D0|AROE_BACCR 253 528 + 276 Gaps:18 98.19 277 37.50 1e-49 Shikimate dehydrogenase OS Bacillus cereus (strain ATCC 14579 / DSM 31) GN aroE PE 3 SV 1
blastp_uniprot_sprot sp|B7HCW1|AROE_BACC4 253 528 + 276 Gaps:18 98.19 277 37.50 1e-49 Shikimate dehydrogenase OS Bacillus cereus (strain B4264) GN aroE PE 3 SV 1
blastp_uniprot_sprot sp|Q46DZ6|AROE_METBF 253 524 + 272 Gaps:24 96.43 280 38.89 2e-49 Shikimate dehydrogenase OS Methanosarcina barkeri (strain Fusaro / DSM 804) GN aroE PE 3 SV 1
blastp_uniprot_sprot sp|A0RIV1|AROE_BACAH 253 526 + 274 Gaps:17 97.11 277 37.92 2e-49 Shikimate dehydrogenase OS Bacillus thuringiensis (strain Al Hakam) GN aroE PE 3 SV 1
blastp_uniprot_sprot sp|B9IYA1|AROE_BACCQ 253 526 + 274 Gaps:19 97.11 277 38.66 4e-49 Shikimate dehydrogenase OS Bacillus cereus (strain Q1) GN aroE PE 3 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 249 355 107 G3DSA:3.40.192.10 none none none
Gene3D 356 529 174 G3DSA:3.40.50.720 none none IPR016040
Pfam 375 474 100 PF01488 none Shikimate / quinate 5-dehydrogenase IPR006151
Hamap 24 246 223 MF_00214 "KEGG:00400+4.2.1.10","MetaCyc:PWY-6163","MetaCyc:PWY-6416","MetaCyc:PWY-6707","UniPathway:UPA00053" 3-dehydroquinate dehydratase [aroD]. IPR001381
TIGRFAM 253 516 264 TIGR00507 "KEGG:00400+1.1.1.25","MetaCyc:PWY-6163","UniPathway:UPA00053" aroE: shikimate dehydrogenase IPR011342
Gene3D 20 245 226 G3DSA:3.20.20.70 none none IPR013785
TIGRFAM 25 242 218 TIGR01093 "KEGG:00400+4.2.1.10","MetaCyc:PWY-6163","MetaCyc:PWY-6416","MetaCyc:PWY-6707","UniPathway:UPA00053" aroD: 3-dehydroquinate dehydratase, type I IPR001381
PANTHER 194 528 335 PTHR21089:SF1 none none none
Pfam 26 244 219 PF01487 "KEGG:00400+4.2.1.10","MetaCyc:PWY-6163","MetaCyc:PWY-6416","MetaCyc:PWY-6707","UniPathway:UPA00053" Type I 3-dehydroquinase IPR001381
Hamap 252 528 277 MF_00222 "KEGG:00400+1.1.1.25","MetaCyc:PWY-6163","UniPathway:UPA00053" Shikimate dehydrogenase (NADP(+)) [aroE]. IPR022893
PANTHER 194 528 335 PTHR21089 none none none
SUPERFAMILY 366 528 163 SSF51735 none none none
SUPERFAMILY 20 245 226 SSF51569 none none none
Pfam 257 337 81 PF08501 "KEGG:00400+1.1.1.25","MetaCyc:PWY-6163","UniPathway:UPA00053" Shikimate dehydrogenase substrate binding domain IPR013708
SUPERFAMILY 244 350 107 SSF53223 none none none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting