Protein : Qrob_P0208710.2 Q. robur
Protein Identifier  ? Qrob_P0208710.2 Organism . Name  Quercus robur
Protein Description  (M=5) 1.1.1.25 - Shikimate dehydrogenase. Alias (in v1)  Qrob_P0771650.1
Code Enzyme  EC:4.2.1.10, EC:1.1.1.25 Gene Prediction Quality  manual_v1
Protein length 

Sequence

Length: 523  
Kegg Orthology  K13832
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0003855 3-dehydroquinate dehydratase activity Catalysis of the reaction: 3-dehydroquinate = 3-dehydroshikimate + H(2)O.
GO:0004764 shikimate 3-dehydrogenase (NADP+) activity Catalysis of the reaction: shikimate + NADP+ = 3-dehydroshikimate + NADPH + H+.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100253776 1 522 + 522 Gaps:3 100.00 519 76.11 0.0 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase chloroplastic-like
blastp_kegg lcl|rcu:RCOM_1429640 1 522 + 522 Gaps:3 100.00 519 76.30 0.0 shikimate dehydrogenase putative (EC:1.1.1.25 4.2.1.10)
blastp_kegg lcl|cit:102608214 1 522 + 522 Gaps:3 100.00 519 75.34 0.0 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase chloroplastic-like
blastp_kegg lcl|pop:POPTR_0005s04490g 1 522 + 522 Gaps:4 100.00 518 74.71 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0013s03080g 1 522 + 522 Gaps:4 100.00 518 73.55 0.0 POPTRDRAFT_240966 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10000874mg 1 509 + 509 Gaps:3 98.64 513 75.10 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_025937 1 522 + 522 Gaps:4 100.00 520 72.50 0.0 Dehydroquinate dehydratase/ shikimate dehydrogenase isoform 1
blastp_kegg lcl|sly:101258500 1 522 + 522 Gaps:5 100.00 519 69.56 0.0 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase chloroplastic-like
blastp_kegg lcl|sot:102578356 1 522 + 522 Gaps:4 100.00 518 69.31 0.0 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase chloroplastic-like
blastp_kegg lcl|gmx:100788604 1 522 + 522 Gaps:8 100.00 524 68.32 0.0 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase chloroplastic-like
blastp_pdb 2o7s_A 8 518 + 511 Gaps:4 97.71 523 52.05 3e-172 mol:protein length:523 Bifunctional 3-dehydroquinate dehydratase/shi
blastp_pdb 2o7q_A 8 518 + 511 Gaps:4 97.71 523 52.05 3e-172 mol:protein length:523 Bifunctional 3-dehydroquinate dehydratase/shi
blastp_pdb 2gpt_A 8 518 + 511 Gaps:4 97.71 523 52.05 3e-172 mol:protein length:523 3-dehydroquinate dehydratase/ shikimate 5-deh
blastp_pdb 3doo_A 242 522 + 281 Gaps:48 94.95 277 34.60 7e-35 mol:protein length:277 Shikimate dehydrogenase
blastp_pdb 3don_A 242 522 + 281 Gaps:48 94.95 277 34.60 7e-35 mol:protein length:277 Shikimate dehydrogenase
blastp_pdb 1nvt_B 235 522 + 288 Gaps:27 97.21 287 35.48 1e-31 mol:protein length:287 Shikimate 5'-dehydrogenase
blastp_pdb 1nvt_A 235 522 + 288 Gaps:27 97.21 287 35.48 1e-31 mol:protein length:287 Shikimate 5'-dehydrogenase
blastp_pdb 1o9b_B 234 518 + 285 Gaps:28 98.26 288 31.10 7e-30 mol:protein length:288 HYPOTHETICAL SHIKIMATE 5-DEHYDROGENASE-LIKE P
blastp_pdb 1o9b_A 234 518 + 285 Gaps:28 98.26 288 31.10 7e-30 mol:protein length:288 HYPOTHETICAL SHIKIMATE 5-DEHYDROGENASE-LIKE P
blastp_pdb 1npd_B 234 518 + 285 Gaps:28 98.26 288 31.10 7e-30 mol:protein length:288 HYPOTHETICAL SHIKIMATE 5-DEHYDROGENASE-LIKE P
blastp_uniprot_sprot sp|Q9SQT8|DHQSD_ARATH 7 518 + 512 Gaps:4 84.91 603 51.95 5e-171 Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase chloroplastic OS Arabidopsis thaliana GN EMB3004 PE 1 SV 1
blastp_uniprot_sprot sp|Q8TZ24|AROE_METKA 235 519 + 285 Gaps:23 96.55 290 40.36 4e-45 Shikimate dehydrogenase OS Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN aroE PE 3 SV 1
blastp_uniprot_sprot sp|Q8YVC1|AROE_NOSS1 235 519 + 285 Gaps:33 97.58 289 31.91 5e-40 Shikimate dehydrogenase OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN aroE PE 3 SV 1
blastp_uniprot_sprot sp|Q818D0|AROE_BACCR 240 522 + 283 Gaps:24 98.56 277 32.60 1e-39 Shikimate dehydrogenase OS Bacillus cereus (strain ATCC 14579 / DSM 31) GN aroE PE 3 SV 1
blastp_uniprot_sprot sp|B7HCW1|AROE_BACC4 240 522 + 283 Gaps:24 98.56 277 32.60 1e-39 Shikimate dehydrogenase OS Bacillus cereus (strain B4264) GN aroE PE 3 SV 1
blastp_uniprot_sprot sp|A9VHW1|AROE_BACWK 240 522 + 283 Gaps:20 98.56 277 32.97 1e-38 Shikimate dehydrogenase OS Bacillus weihenstephanensis (strain KBAB4) GN aroE PE 3 SV 1
blastp_uniprot_sprot sp|B9IYA1|AROE_BACCQ 240 522 + 283 Gaps:20 98.56 277 32.60 3e-38 Shikimate dehydrogenase OS Bacillus cereus (strain Q1) GN aroE PE 3 SV 1
blastp_uniprot_sprot sp|B7HPN3|AROE_BACC7 240 522 + 283 Gaps:20 98.56 277 32.60 3e-38 Shikimate dehydrogenase OS Bacillus cereus (strain AH187) GN aroE PE 3 SV 1
blastp_uniprot_sprot sp|B7IYI7|AROE_BACC2 240 522 + 283 Gaps:24 98.56 277 32.60 3e-38 Shikimate dehydrogenase OS Bacillus cereus (strain G9842) GN aroE PE 3 SV 1
blastp_uniprot_sprot sp|A7GT28|AROE_BACCN 240 522 + 283 Gaps:22 98.56 277 32.97 7e-38 Shikimate dehydrogenase OS Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN aroE PE 3 SV 1

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 10 10 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Pfam 15 231 217 PF01487 "KEGG:00400+4.2.1.10","MetaCyc:PWY-6163","MetaCyc:PWY-6416","MetaCyc:PWY-6707","UniPathway:UPA00053" Type I 3-dehydroquinase IPR001381
SUPERFAMILY 235 340 106 SSF53223 none none none
Phobius 19 22 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 11 18 8 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Gene3D 9 232 224 G3DSA:3.20.20.70 none none IPR013785
Phobius 1 22 22 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 183 519 337 PTHR21089:SF1 none none none
TIGRFAM 14 230 217 TIGR01093 "KEGG:00400+4.2.1.10","MetaCyc:PWY-6163","MetaCyc:PWY-6416","MetaCyc:PWY-6707","UniPathway:UPA00053" aroD: 3-dehydroquinate dehydratase, type I IPR001381
Pfam 368 449 82 PF01488 none Shikimate / quinate 5-dehydrogenase IPR006151
Gene3D 235 345 111 G3DSA:3.40.192.10 none none none
Hamap 239 520 282 MF_00222 "KEGG:00400+1.1.1.25","MetaCyc:PWY-6163","UniPathway:UPA00053" Shikimate dehydrogenase (NADP(+)) [aroE]. IPR022893
SUPERFAMILY 357 519 163 SSF51735 none none none
Gene3D 346 520 175 G3DSA:3.40.50.720 none none IPR016040
Pfam 244 326 83 PF08501 "KEGG:00400+1.1.1.25","MetaCyc:PWY-6163","UniPathway:UPA00053" Shikimate dehydrogenase substrate binding domain IPR013708
SUPERFAMILY 7 232 226 SSF51569 none none none
PANTHER 183 519 337 PTHR21089 none none none
Phobius 23 522 500 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 20   Secretory pathway 2 0.854 0.048 NON-PLANT 20