Protein : Qrob_P0207470.2 Q. robur
Protein Identifier  ? Qrob_P0207470.2 Organism . Name  Quercus robur
Score  32.0 Score Type  egn
Protein Description  (M=2) KOG0217//KOG0218//KOG0219//KOG0221 - Mismatch repair ATPase MSH6 (MutS family) [Replication recombination and repair]. // Mismatch repair MSH3 [Replication recombination and repair]. // Mismatch repair ATPase MSH2 (MutS family) [Replication recombination and repair]. // Mismatch repair ATPase MSH5 (MutS family) [Replication recombination and repair]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 373  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006298 mismatch repair A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO:0030983 mismatched DNA binding Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1217070 29 351 + 323 none 34.47 937 82.35 0.0 ATP binding protein putative
blastp_kegg lcl|pxb:103933658 29 351 + 323 none 28.33 1140 82.35 0.0 DNA mismatch repair protein MSH1 mitochondrial
blastp_kegg lcl|pmum:103323794 29 351 + 323 none 29.05 1112 81.11 0.0 DNA mismatch repair protein MSH1 mitochondrial
blastp_kegg lcl|pop:POPTR_0010s07550g 29 351 + 323 none 28.58 1130 81.42 0.0 POPTRDRAFT_885217 chloroplast mutator family protein
blastp_kegg lcl|tcc:TCM_021024 29 351 + 323 none 29.10 1110 81.42 0.0 MUTL protein isoform 1
blastp_kegg lcl|vvi:100266612 29 351 + 323 none 28.23 1144 79.88 0.0 uncharacterized LOC100266612
blastp_kegg lcl|pper:PRUPE_ppa000475mg 29 351 + 323 Gaps:1 28.32 1144 80.86 0.0 hypothetical protein
blastp_kegg lcl|fve:101291235 29 351 + 323 none 25.25 1279 80.50 8e-178 DNA mismatch repair protein MSH1 mitochondrial-like
blastp_kegg lcl|cit:102611883 29 351 + 323 Gaps:7 27.79 1137 81.96 3e-173 DNA mismatch repair protein MSH1 mitochondrial-like
blastp_kegg lcl|csv:101228304 29 351 + 323 Gaps:3 48.30 675 74.54 1e-167 DNA mismatch repair protein MSH1 mitochondrial-like
blastp_pdb 1ewr_B 279 351 + 73 Gaps:1 11.40 649 44.59 5e-09 mol:protein length:649 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1ewr_A 279 351 + 73 Gaps:1 11.40 649 44.59 5e-09 mol:protein length:649 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1nne_B 279 351 + 73 Gaps:1 9.67 765 44.59 6e-09 mol:protein length:765 DNA Mismatch Repair protein MutS
blastp_pdb 1nne_A 279 351 + 73 Gaps:1 9.67 765 44.59 6e-09 mol:protein length:765 DNA Mismatch Repair protein MutS
blastp_pdb 1ewq_B 279 351 + 73 Gaps:1 9.67 765 44.59 6e-09 mol:protein length:765 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1ewq_A 279 351 + 73 Gaps:1 9.67 765 44.59 6e-09 mol:protein length:765 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1fw6_B 279 351 + 73 Gaps:1 9.64 768 44.59 6e-09 mol:protein length:768 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1fw6_A 279 351 + 73 Gaps:1 9.64 768 44.59 6e-09 mol:protein length:768 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 2wtu_B 281 351 + 71 none 8.88 800 35.21 5e-06 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 2wtu_A 281 351 + 71 none 8.88 800 35.21 5e-06 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_uniprot_sprot sp|Q84LK0|MSH1_ARATH 29 351 + 323 Gaps:1 28.98 1118 73.15 2e-160 DNA mismatch repair protein MSH1 mitochondrial OS Arabidopsis thaliana GN MSH1 PE 1 SV 1
blastp_uniprot_sprot sp|Q88UZ7|MUTS_LACPL 200 369 + 170 Gaps:34 18.30 896 35.37 8e-10 DNA mismatch repair protein MutS OS Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|Q1WT15|MUTS_LACS1 188 369 + 182 Gaps:25 19.98 876 32.00 2e-09 DNA mismatch repair protein MutS OS Lactobacillus salivarius (strain UCC118) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|Q9KAC0|MUTS_BACHD 273 351 + 79 Gaps:3 9.48 865 36.59 6e-09 DNA mismatch repair protein MutS OS Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|P26359|MSH3_SCHPO 273 351 + 79 Gaps:4 8.36 993 38.55 7e-09 DNA mismatch repair protein msh3 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN msh3 PE 3 SV 1
blastp_uniprot_sprot sp|Q045Q5|MUTS_LACGA 200 351 + 152 Gaps:26 17.97 857 32.47 8e-09 DNA mismatch repair protein MutS OS Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|P61668|MUTS_LACJO 200 351 + 152 Gaps:26 17.97 857 31.82 8e-09 DNA mismatch repair protein MutS OS Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|A6W1Q6|MUTS_MARMS 286 351 + 66 none 7.47 883 48.48 9e-09 DNA mismatch repair protein MutS OS Marinomonas sp. (strain MWYL1) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|Q6CHE5|MSH3_YARLI 279 351 + 73 none 7.37 990 42.47 9e-09 DNA mismatch repair protein MSH3 OS Yarrowia lipolytica (strain CLIB 122 / E 150) GN MSH3 PE 3 SV 1
blastp_uniprot_sprot sp|Q03VV4|MUTS_LEUMM 273 351 + 79 Gaps:3 8.90 854 42.11 1e-08 DNA mismatch repair protein MutS OS Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN mutS PE 3 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 280 350 71 SSF52540 none none IPR027417
PANTHER 29 351 323 PTHR11361:SF82 none none none
Phobius 1 6 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 280 352 73 PF00488 none MutS domain V IPR000432
Coils 77 98 22 Coil none none none
PANTHER 29 351 323 PTHR11361 none none none
Phobius 28 209 182 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 228 372 145 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 210 227 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 261 351 91 G3DSA:3.40.50.300 none none IPR027417
Phobius 7 27 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

1 Localization

Analysis Start End Length
TMHMM 7 29 22

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 32   Secretory pathway 1 0.991 0.003 NON-PLANT 32