Protein : Qrob_P0206580.2 Q. robur
Protein Identifier  ? Qrob_P0206580.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K05655 - ATP-binding cassette, subfamily B (MDR/TAP), member 8 Code Enzyme  EC:3.6.3.43
Gene Prediction Quality  validated Protein length 

Sequence

Length: 690  
Kegg Orthology  K05655
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0042626 ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103439709 1 689 + 689 Gaps:47 100.00 706 79.32 0.0 ABC transporter B family member 28
blastp_kegg lcl|pmum:103333263 1 689 + 689 Gaps:46 100.00 713 78.82 0.0 ABC transporter B family member 28
blastp_kegg lcl|pxb:103960517 1 689 + 689 Gaps:45 100.00 706 79.18 0.0 ABC transporter B family member 28
blastp_kegg lcl|pper:PRUPE_ppa002147mg 1 689 + 689 Gaps:42 100.00 709 78.42 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_015080 2 689 + 688 Gaps:43 99.31 724 77.33 0.0 Non-intrinsic ABC protein 8 isoform 1
blastp_kegg lcl|mtr:MTR_050s0020 5 689 + 685 Gaps:66 96.84 728 74.18 0.0 ABC transporter B family member
blastp_kegg lcl|cit:102617635 33 689 + 657 Gaps:43 86.96 782 78.97 0.0 ABC transporter B family member 28-like
blastp_kegg lcl|vvi:100262436 1 689 + 689 Gaps:46 100.00 717 73.78 0.0 ABC transporter B family member 28-like
blastp_kegg lcl|cam:101502207 62 689 + 628 Gaps:34 90.71 721 76.45 0.0 ABC transporter B family member 28-like
blastp_kegg lcl|gmx:100791034 69 689 + 621 Gaps:34 91.13 710 76.97 0.0 ABC transporter B family member 28-like
blastp_pdb 2yl4_A 110 684 + 575 Gaps:96 95.29 595 37.39 5e-88 mol:protein length:595 ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10
blastp_pdb 4aa3_A 110 684 + 575 Gaps:96 91.60 619 37.21 4e-87 mol:protein length:619 ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10
blastp_pdb 3g61_B 254 684 + 431 Gaps:52 48.83 1284 47.21 2e-76 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g61_A 254 684 + 431 Gaps:52 48.83 1284 47.21 2e-76 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_B 254 684 + 431 Gaps:52 48.83 1284 47.21 2e-76 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_A 254 684 + 431 Gaps:52 48.83 1284 47.21 2e-76 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g5u_B 254 684 + 431 Gaps:52 48.83 1284 47.21 2e-76 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g5u_A 254 684 + 431 Gaps:52 48.83 1284 47.21 2e-76 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 4a82_D 257 686 + 430 Gaps:48 66.44 578 38.80 5e-69 mol:protein length:578 CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REG
blastp_pdb 4a82_C 257 686 + 430 Gaps:48 66.44 578 38.80 5e-69 mol:protein length:578 CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REG
blastp_uniprot_sprot sp|Q8LPQ6|AB28B_ARATH 23 689 + 667 Gaps:47 95.52 714 68.91 0.0 ABC transporter B family member 28 OS Arabidopsis thaliana GN ABCB28 PE 2 SV 1
blastp_uniprot_sprot sp|Q5RKI8|ABCB8_RAT 52 686 + 635 Gaps:100 88.66 714 35.23 1e-89 ATP-binding cassette sub-family B member 8 mitochondrial OS Rattus norvegicus GN Abcb8 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FNU2|AB25B_ORYSJ 107 684 + 578 Gaps:88 89.24 641 39.34 1e-88 ABC transporter B family member 25 OS Oryza sativa subsp. japonica GN OsABCB25 PE 2 SV 1
blastp_uniprot_sprot sp|Q9JI39|ABCBA_MOUSE 87 684 + 598 Gaps:93 82.66 715 37.73 8e-88 ATP-binding cassette sub-family B member 10 mitochondrial OS Mus musculus GN Abcb10 PE 2 SV 1
blastp_uniprot_sprot sp|Q5RFQ9|ABCB8_PONAB 98 686 + 589 Gaps:98 80.92 718 37.18 3e-87 ATP-binding cassette sub-family B member 8 mitochondrial OS Pongo abelii GN ABCB8 PE 2 SV 1
blastp_uniprot_sprot sp|Q0WML0|AB27B_ARATH 75 684 + 610 Gaps:87 93.94 644 36.20 4e-87 ABC transporter B family member 27 OS Arabidopsis thaliana GN ABCB27 PE 1 SV 1
blastp_uniprot_sprot sp|Q9NUT2|ABCB8_HUMAN 86 686 + 601 Gaps:96 81.77 735 36.27 3e-86 ATP-binding cassette sub-family B member 8 mitochondrial OS Homo sapiens GN ABCB8 PE 1 SV 3
blastp_uniprot_sprot sp|Q9CXJ4|ABCB8_MOUSE 52 686 + 635 Gaps:104 88.28 717 34.12 5e-86 ATP-binding cassette sub-family B member 8 mitochondrial OS Mus musculus GN Abcb8 PE 2 SV 1
blastp_uniprot_sprot sp|Q56A55|ABCB8_DANRE 53 685 + 633 Gaps:109 88.52 714 35.44 6e-86 ATP-binding cassette sub-family B member 8 mitochondrial OS Danio rerio GN abcb8 PE 2 SV 1
blastp_uniprot_sprot sp|Q9NRK6|ABCBA_HUMAN 110 684 + 575 Gaps:96 76.83 738 37.39 7e-86 ATP-binding cassette sub-family B member 10 mitochondrial OS Homo sapiens GN ABCB10 PE 1 SV 2

24 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 315 332 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 443 688 246 PTHR24221:SF169 none none none
Pfam 463 614 152 PF00005 none ABC transporter IPR003439
PANTHER 55 401 347 PTHR24221:SF169 none none none
Phobius 159 179 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 445 683 239 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
Phobius 333 337 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SMART 472 666 195 SM00382 none ATPases associated with a variety of cellular activities IPR003593
Phobius 361 689 329 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 180 314 135 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSitePatterns 586 600 15 PS00211 none ABC transporters family signature. IPR017871
PANTHER 55 401 347 PTHR24221 none none none
PANTHER 443 688 246 PTHR24221 none none none
SUPERFAMILY 438 684 247 SSF52540 none none IPR027417
SUPERFAMILY 100 384 285 SSF90123 none none IPR011527
Phobius 114 139 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 239 356 118 PF00664 none ABC transporter transmembrane region IPR011527
Phobius 140 158 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 103 222 120 G3DSA:1.20.1560.10 none none none
Gene3D 240 381 142 G3DSA:1.20.1560.10 none none none
Phobius 1 113 113 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 115 368 254 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527
Gene3D 445 678 234 G3DSA:3.40.50.300 none none IPR027417
Phobius 338 360 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

3 Localization

Analysis Start End Length
TMHMM 112 134 22
TMHMM 338 360 22
TMHMM 157 179 22

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 20   Mitochondrion 1 0.039 0.937 NON-PLANT 20