Protein : Qrob_P0206260.2 Q. robur
Protein Identifier  ? Qrob_P0206260.2 Organism . Name  Quercus robur
Score  86.0 Score Type  egn
Protein Description  (M=14) KOG1965 - Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 323  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006812 cation transport The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0015299 solute:proton antiporter activity Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out).

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100255888 177 322 + 146 none 32.81 445 77.40 2e-75 pentatricopeptide repeat-containing protein At4g35850 mitochondrial-like
blastp_kegg lcl|pmum:103329766 177 322 + 146 Gaps:2 32.43 444 75.69 1e-70 pentatricopeptide repeat-containing protein At4g35850 mitochondrial
blastp_kegg lcl|pper:PRUPE_ppa005766mg 177 322 + 146 Gaps:2 32.43 444 75.69 2e-70 hypothetical protein
blastp_kegg lcl|mdm:103432021 177 322 + 146 Gaps:2 32.51 443 73.61 8e-70 pentatricopeptide repeat-containing protein At4g35850 mitochondrial-like
blastp_kegg lcl|mdm:103425797 177 322 + 146 Gaps:2 32.51 443 73.61 8e-70 pentatricopeptide repeat-containing protein At4g35850 mitochondrial-like
blastp_kegg lcl|mdm:103416951 177 322 + 146 Gaps:2 32.51 443 73.61 8e-70 pentatricopeptide repeat-containing protein At4g35850 mitochondrial-like
blastp_kegg lcl|mdm:103404248 177 322 + 146 Gaps:2 32.51 443 73.61 8e-70 pentatricopeptide repeat-containing protein At4g35850 mitochondrial-like
blastp_kegg lcl|pxb:103960964 177 322 + 146 Gaps:2 32.51 443 73.61 1e-69 pentatricopeptide repeat-containing protein At4g35850 mitochondrial-like
blastp_kegg lcl|tcc:TCM_017009 177 322 + 146 none 28.97 504 71.23 1e-69 Pentatricopeptide repeat superfamily protein
blastp_kegg lcl|pxb:103959704 177 322 + 146 Gaps:2 32.36 445 72.92 3e-68 pentatricopeptide repeat-containing protein At4g35850 mitochondrial-like
blastp_uniprot_sprot sp|Q8VYR5|PP351_ARATH 177 321 + 145 none 32.66 444 65.52 1e-62 Pentatricopeptide repeat-containing protein At4g35850 mitochondrial OS Arabidopsis thaliana GN At4g35850 PE 1 SV 1
blastp_uniprot_sprot sp|Q84WG1|NHX3_ARATH 76 197 + 122 Gaps:12 22.66 503 60.53 3e-32 Sodium/hydrogen exchanger 3 OS Arabidopsis thaliana GN NHX3 PE 2 SV 2
blastp_uniprot_sprot sp|Q56XP4|NHX2_ARATH 77 197 + 121 Gaps:12 20.70 546 59.29 4e-31 Sodium/hydrogen exchanger 2 OS Arabidopsis thaliana GN NHX2 PE 2 SV 2
blastp_uniprot_sprot sp|Q8S397|NHX4_ARATH 77 157 + 81 none 15.31 529 67.90 1e-26 Sodium/hydrogen exchanger 4 OS Arabidopsis thaliana GN NHX4 PE 2 SV 2
blastp_uniprot_sprot sp|Q68KI4|NHX1_ARATH 77 197 + 121 Gaps:12 21.00 538 58.41 3e-23 Sodium/hydrogen exchanger 1 OS Arabidopsis thaliana GN NHX1 PE 1 SV 2
blastp_uniprot_sprot sp|Q5ZJ75|SL9A8_CHICK 78 154 + 77 Gaps:5 14.29 574 42.68 6e-08 Sodium/hydrogen exchanger 8 OS Gallus gallus PE 2 SV 1
blastp_uniprot_sprot sp|Q04121|NHX1_YEAST 44 157 + 114 Gaps:5 18.80 633 32.77 4e-07 Endosomal/prevacuolar sodium/hydrogen exchanger OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN NHX1 PE 1 SV 1
blastp_uniprot_sprot sp|Q4R8V4|SL9A8_MACFA 78 154 + 77 Gaps:5 15.13 542 41.46 5e-07 Sodium/hydrogen exchanger 8 OS Macaca fascicularis GN SLC9A8 PE 2 SV 1
blastp_uniprot_sprot sp|Q9Y2E8|SL9A8_HUMAN 78 154 + 77 Gaps:5 14.11 581 41.46 6e-07 Sodium/hydrogen exchanger 8 OS Homo sapiens GN SLC9A8 PE 1 SV 4
blastp_uniprot_sprot sp|Q8R4D1|SL9A8_MOUSE 78 154 + 77 Gaps:9 14.24 576 43.90 1e-06 Sodium/hydrogen exchanger 8 OS Mus musculus GN Slc9a8 PE 2 SV 1
rpsblast_cdd gnl|CDD|162063 77 147 + 71 Gaps:1 12.88 559 29.17 9e-09 TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria blue green bacteria yeast plants and animals.Transporters from eukaryotes have been functionally characterized and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in(1) cytoplasmic pH regulation extruding the H+ generated during metabolism and (2) salt tolerance (in plants) due to Na+ uptake into vacuoles.This Hmm is specific for the eukaryotic members members of this family.
rpsblast_cdd gnl|CDD|201544 77 157 + 81 Gaps:3 22.16 370 30.49 4e-07 pfam00999 Na_H_Exchanger Sodium/hydrogen exchanger family. Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family.
rpsblast_kog gnl|CDD|37176 77 157 + 81 Gaps:1 14.26 575 47.56 4e-24 KOG1965 KOG1965 KOG1965 Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 77 158 82 PF00999 none Sodium/hydrogen exchanger family IPR006153
Phobius 139 160 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 177 302 126 PTHR24015:SF307 none none none
Phobius 1 138 138 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 177 302 126 PTHR24015 none none none
Phobius 161 322 162 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4

0 Targeting