Protein : Qrob_P0205220.2 Q. robur
Protein Identifier  ? Qrob_P0205220.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K11088 - small nuclear ribonucleoprotein D3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 114  
Kegg Orthology  K11088
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10002830mg 1 113 + 113 Gaps:19 100.00 132 83.33 1e-71 hypothetical protein
blastp_kegg lcl|cit:102614429 1 113 + 113 Gaps:19 100.00 132 83.33 1e-71 small nuclear ribonucleoprotein Sm D3-like
blastp_kegg lcl|pop:POPTR_0002s01120g 1 113 + 113 Gaps:19 100.00 132 81.82 4e-71 POPTRDRAFT_550771 small nuclear ribonucleoprotein D3
blastp_kegg lcl|pop:POPTR_0005s27250g 1 113 + 113 Gaps:19 100.00 132 81.06 9e-70 POPTRDRAFT_715635 small nuclear ribonucleoprotein D3
blastp_kegg lcl|mdm:103440189 1 113 + 113 Gaps:20 100.00 131 83.21 3e-69 small nuclear ribonucleoprotein Sm D3
blastp_kegg lcl|pxb:103927018 1 113 + 113 Gaps:20 100.00 131 83.21 3e-69 small nuclear ribonucleoprotein Sm D3
blastp_kegg lcl|sly:101247792 1 113 + 113 Gaps:19 100.00 132 78.03 5e-69 small nuclear ribonucleoprotein Sm D3-like
blastp_kegg lcl|mdm:103450318 1 113 + 113 Gaps:20 100.00 131 83.21 5e-69 small nuclear ribonucleoprotein Sm D3-like
blastp_kegg lcl|mus:104000483 1 113 + 113 Gaps:20 100.00 133 80.45 6e-69 small nuclear ribonucleoprotein Sm D3-like
blastp_kegg lcl|pvu:PHAVU_002G266900g 1 113 + 113 Gaps:20 100.00 131 82.44 7e-69 hypothetical protein
blastp_pdb 3pgw_W 4 102 + 99 none 78.57 126 58.59 3e-42 mol:protein length:126 Sm-D3
blastp_pdb 3pgw_Z 4 102 + 99 none 78.57 126 58.59 3e-42 mol:protein length:126 Sm-D3
blastp_pdb 2y9d_R 4 102 + 99 none 78.57 126 58.59 3e-42 mol:protein length:126 SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3
blastp_pdb 2y9d_K 4 102 + 99 none 78.57 126 58.59 3e-42 mol:protein length:126 SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3
blastp_pdb 2y9d_D 4 102 + 99 none 78.57 126 58.59 3e-42 mol:protein length:126 SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3
blastp_pdb 2y9c_R 4 102 + 99 none 78.57 126 58.59 3e-42 mol:protein length:126 SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3
blastp_pdb 2y9c_K 4 102 + 99 none 78.57 126 58.59 3e-42 mol:protein length:126 SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3
blastp_pdb 2y9c_D 4 102 + 99 none 78.57 126 58.59 3e-42 mol:protein length:126 SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3
blastp_pdb 2y9b_R 4 102 + 99 none 78.57 126 58.59 3e-42 mol:protein length:126 SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3
blastp_pdb 2y9b_K 4 102 + 99 none 78.57 126 58.59 3e-42 mol:protein length:126 SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3
blastp_uniprot_sprot sp|P62323|SMD3_XENLA 4 102 + 99 none 78.57 126 58.59 1e-41 Small nuclear ribonucleoprotein Sm D3 OS Xenopus laevis GN snrpd3 PE 2 SV 1
blastp_uniprot_sprot sp|P62320|SMD3_MOUSE 4 102 + 99 none 78.57 126 58.59 1e-41 Small nuclear ribonucleoprotein Sm D3 OS Mus musculus GN Snrpd3 PE 1 SV 1
blastp_uniprot_sprot sp|P62318|SMD3_HUMAN 4 102 + 99 none 78.57 126 58.59 1e-41 Small nuclear ribonucleoprotein Sm D3 OS Homo sapiens GN SNRPD3 PE 1 SV 1
blastp_uniprot_sprot sp|O44437|SMD3_DROME 4 102 + 99 none 65.56 151 55.56 4e-38 Small nuclear ribonucleoprotein Sm D3 OS Drosophila melanogaster GN SmD3 PE 1 SV 1
blastp_uniprot_sprot sp|Q17348|SMD3_CAEEL 4 100 + 97 Gaps:1 70.59 136 57.29 2e-35 Small nuclear ribonucleoprotein Sm D3 OS Caenorhabditis elegans GN snr-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9UUC6|SMD3_SCHPO 5 112 + 108 Gaps:14 96.91 97 55.32 1e-33 Small nuclear ribonucleoprotein Sm D3 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN smd3 PE 1 SV 1
blastp_uniprot_sprot sp|P43321|SMD3_YEAST 6 91 + 86 none 85.15 101 50.00 3e-29 Small nuclear ribonucleoprotein Sm D3 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SMD3 PE 1 SV 1
blastp_uniprot_sprot sp|Q54KX4|LSM4_DICDI 7 79 + 73 Gaps:3 41.81 177 39.19 1e-12 Probable U6 snRNA-associated Sm-like protein LSm4 OS Dictyostelium discoideum GN lsm4 PE 3 SV 1
blastp_uniprot_sprot sp|Q9QXA5|LSM4_MOUSE 7 100 + 94 Gaps:11 63.50 137 40.23 1e-11 U6 snRNA-associated Sm-like protein LSm4 OS Mus musculus GN Lsm4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZRU9|LSM4_FAGSY 7 77 + 71 Gaps:1 48.65 148 37.50 1e-11 Probable U6 snRNA-associated Sm-like protein LSm4 OS Fagus sylvatica GN LSM4 PE 2 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 4 106 103 PTHR23338:SF17 none none none
PANTHER 4 106 103 PTHR23338 none none IPR027141
SMART 10 75 66 SM00651 none snRNP Sm proteins IPR006649
Gene3D 7 86 80 G3DSA:2.30.30.100 none none none
Pfam 11 74 64 PF01423 none LSM domain IPR001163
SUPERFAMILY 8 106 99 SSF50182 none none IPR010920

0 Localization

15 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting