Protein : Qrob_P0204390.2 Q. robur
Protein Identifier  ? Qrob_P0204390.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=12) KOG4629 - Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 751  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0042626 ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103321186 4 747 + 744 Gaps:21 98.70 767 67.77 0.0 mechanosensitive ion channel protein 8-like
blastp_kegg lcl|pper:PRUPE_ppa001779mg 4 747 + 744 Gaps:20 98.69 766 67.06 0.0 hypothetical protein
blastp_kegg lcl|fve:101303395 38 749 + 712 Gaps:23 54.31 1287 65.67 0.0 mechanosensitive ion channel protein 8-like
blastp_kegg lcl|mdm:103410417 6 743 + 738 Gaps:28 99.47 758 64.06 0.0 mechanosensitive ion channel protein 8-like
blastp_kegg lcl|tcc:TCM_034315 1 745 + 745 Gaps:37 95.12 799 60.66 0.0 Mechanosensitive ion channel domain-containing protein putative
blastp_kegg lcl|cmo:103490566 1 742 + 742 Gaps:61 82.23 923 57.18 0.0 mechanosensitive ion channel protein 6-like
blastp_kegg lcl|csv:101210264 37 742 + 706 Gaps:45 80.07 923 57.78 0.0 mechanosensitive ion channel protein 8-like
blastp_kegg lcl|pop:POPTR_0005s26790g 6 750 + 745 Gaps:50 89.49 828 62.08 0.0 hypothetical protein
blastp_kegg lcl|pda:103708726 58 748 + 691 Gaps:41 78.33 932 56.03 0.0 mechanosensitive ion channel protein 6-like
blastp_kegg lcl|sly:101251284 60 749 + 690 Gaps:15 79.57 876 61.41 0.0 mechanosensitive ion channel protein 8-like
blastp_uniprot_sprot sp|F4IME2|MSL8_ARATH 63 745 + 683 Gaps:22 75.00 908 56.39 0.0 Mechanosensitive ion channel protein 8 OS Arabidopsis thaliana GN MSL8 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LPG3|MSL4_ARATH 17 745 + 729 Gaps:43 86.72 881 50.00 0.0 Mechanosensitive ion channel protein 4 OS Arabidopsis thaliana GN MSL4 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LH74|MSL5_ARATH 24 745 + 722 Gaps:56 83.77 881 53.66 0.0 Mechanosensitive ion channel protein 5 OS Arabidopsis thaliana GN MSL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SYM1|MSL6_ARATH 58 750 + 693 Gaps:44 82.83 856 55.15 0.0 Mechanosensitive ion channel protein 6 OS Arabidopsis thaliana GN MSL6 PE 1 SV 1
blastp_uniprot_sprot sp|F4IME1|MSL7_ARATH 16 745 + 730 Gaps:52 88.57 849 48.54 0.0 Mechanosensitive ion channel protein 7 OS Arabidopsis thaliana GN MSL7 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LYG9|MSL10_ARATH 38 730 + 693 Gaps:89 96.46 734 39.69 1e-163 Mechanosensitive ion channel protein 10 OS Arabidopsis thaliana GN MSL10 PE 1 SV 1
blastp_uniprot_sprot sp|Q84M97|MSL9_ARATH 127 730 + 604 Gaps:47 76.42 742 42.50 9e-147 Mechanosensitive ion channel protein 9 OS Arabidopsis thaliana GN MSL9 PE 2 SV 1
blastp_uniprot_sprot sp|O74839|YC1B_SCHPO 251 719 + 469 Gaps:50 43.82 1011 24.38 2e-26 Uncharacterized MscS family protein C1183.11 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPCC1183.11 PE 1 SV 1
blastp_uniprot_sprot sp|O14050|YEYH_SCHPO 232 703 + 472 Gaps:47 51.55 840 23.33 9e-20 Uncharacterized MscS family protein C2C4.17c OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPAC2C4.17c PE 3 SV 1
rpsblast_cdd gnl|CDD|201506 516 721 + 206 Gaps:10 100.00 202 24.75 2e-16 pfam00924 MS_channel Mechanosensitive ion channel. Two members of this protein family from M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.
rpsblast_cdd gnl|CDD|31012 484 744 + 261 Gaps:11 80.38 316 22.05 1e-15 COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis outer membrane].
rpsblast_kog gnl|CDD|39829 27 742 + 716 Gaps:63 94.26 714 44.43 1e-172 KOG4629 KOG4629 KOG4629 Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis].

22 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 572 750 179 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 217 234 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 235 245 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PIRSF 3 750 748 PIRSF017209 none none IPR016688
Phobius 516 542 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 543 547 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 574 623 50 G3DSA:2.30.30.60 none none none
SUPERFAMILY 564 623 60 SSF50182 none none IPR010920
Phobius 134 155 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Coils 309 330 22 Coil none none none
PANTHER 83 747 665 PTHR31618 none none none
Phobius 1 133 133 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 156 174 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 480 553 74 SSF90123 none none IPR011527
SUPERFAMILY 137 214 78 SSF90123 none none IPR011527
Phobius 246 266 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 548 571 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 83 747 665 PTHR31618:SF2 none none none
Phobius 197 216 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 515 720 206 PF00924 none Mechanosensitive ion channel IPR006685
Phobius 175 196 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 267 515 249 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

6 Localization

Analysis Start End Length
TMHMM 216 234 18
TMHMM 173 195 22
TMHMM 516 538 22
TMHMM 548 570 22
TMHMM 136 158 22
TMHMM 254 276 22

15 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting