Protein : Qrob_P0203700.2 Q. robur
Protein Identifier  ? Qrob_P0203700.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) 1.1.1.95 - Phosphoglycerate dehydrogenase. Code Enzyme  EC:1.1.1.95
Gene Prediction Quality  validated Protein length 

Sequence

Length: 602  
Kegg Orthology  K00058
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0016597 amino acid binding Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
GO:0051287 NAD binding Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
GO:0004617 phosphoglycerate dehydrogenase activity Catalysis of the reaction: 3-phosphoglycerate + NAD+ = 3-phosphohydroxypyruvate + NADH + H+.
GO:0006564 L-serine biosynthetic process The chemical reactions and pathways resulting in the formation of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa003143mg 1 601 + 601 Gaps:2 100.00 599 89.32 0.0 hypothetical protein
blastp_kegg lcl|pxb:103928525 1 601 + 601 Gaps:3 100.00 598 88.46 0.0 D-3-phosphoglycerate dehydrogenase 1 chloroplastic-like
blastp_kegg lcl|gmx:100819264 1 601 + 601 Gaps:7 100.00 594 88.55 0.0 d-3-phosphoglycerate dehydrogenase chloroplastic-like
blastp_kegg lcl|mdm:103417000 1 601 + 601 Gaps:3 100.00 598 88.63 0.0 D-3-phosphoglycerate dehydrogenase chloroplastic-like
blastp_kegg lcl|pxb:103928519 1 601 + 601 Gaps:3 100.00 598 88.46 0.0 D-3-phosphoglycerate dehydrogenase 1 chloroplastic-like
blastp_kegg lcl|pmum:103335142 1 601 + 601 Gaps:6 100.00 595 88.57 0.0 D-3-phosphoglycerate dehydrogenase chloroplastic
blastp_kegg lcl|cam:101513477 2 601 + 600 Gaps:6 99.66 596 89.39 0.0 d-3-phosphoglycerate dehydrogenase chloroplastic-like
blastp_kegg lcl|rcu:RCOM_0811570 1 601 + 601 Gaps:5 100.00 596 87.58 0.0 d-3-phosphoglycerate dehydrogenase putative (EC:1.1.1.95)
blastp_kegg lcl|cmo:103496183 1 601 + 601 Gaps:2 100.00 599 87.65 0.0 D-3-phosphoglycerate dehydrogenase chloroplastic
blastp_kegg lcl|tcc:TCM_007131 8 601 + 594 Gaps:6 99.67 600 87.12 0.0 D-3-phosphoglycerate dehydrogenase isoform 1
blastp_pdb 2g76_B 62 364 + 303 Gaps:3 90.15 335 47.68 1e-87 mol:protein length:335 D-3-phosphoglycerate dehydrogenase
blastp_pdb 2g76_A 62 364 + 303 Gaps:3 90.15 335 47.68 1e-87 mol:protein length:335 D-3-phosphoglycerate dehydrogenase
blastp_pdb 3dc2_B 60 555 + 496 Gaps:34 90.36 529 39.33 1e-77 mol:protein length:529 D-3-phosphoglycerate dehydrogenase
blastp_pdb 3dc2_A 60 555 + 496 Gaps:34 90.36 529 39.33 1e-77 mol:protein length:529 D-3-phosphoglycerate dehydrogenase
blastp_pdb 1ygy_B 60 555 + 496 Gaps:34 90.36 529 39.33 1e-77 mol:protein length:529 D-3-phosphoglycerate dehydrogenase
blastp_pdb 1ygy_A 60 555 + 496 Gaps:34 90.36 529 39.33 1e-77 mol:protein length:529 D-3-phosphoglycerate dehydrogenase
blastp_pdb 3ddn_B 60 555 + 496 Gaps:34 90.53 528 39.33 1e-77 mol:protein length:528 D-3-phosphoglycerate dehydrogenase
blastp_pdb 3ddn_A 60 555 + 496 Gaps:34 90.53 528 39.33 1e-77 mol:protein length:528 D-3-phosphoglycerate dehydrogenase
blastp_pdb 1wwk_B 62 363 + 302 Gaps:4 98.37 307 42.72 2e-69 mol:protein length:307 phosphoglycerate dehydrogenase
blastp_pdb 1wwk_A 62 363 + 302 Gaps:4 98.37 307 42.72 2e-69 mol:protein length:307 phosphoglycerate dehydrogenase
blastp_uniprot_sprot sp|O04130|SERA_ARATH 59 601 + 543 none 87.02 624 78.82 0.0 D-3-phosphoglycerate dehydrogenase chloroplastic OS Arabidopsis thaliana GN At1g17745 PE 1 SV 2
blastp_uniprot_sprot sp|Q58424|SERA_METJA 62 601 + 540 Gaps:31 99.43 524 43.19 3e-132 D-3-phosphoglycerate dehydrogenase OS Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN serA PE 3 SV 1
blastp_uniprot_sprot sp|O27051|SERA_METTH 62 601 + 540 Gaps:22 99.05 525 41.73 1e-121 D-3-phosphoglycerate dehydrogenase OS Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN serA PE 3 SV 1
blastp_uniprot_sprot sp|O29445|SERA_ARCFU 62 601 + 540 Gaps:23 99.62 527 41.33 1e-118 D-3-phosphoglycerate dehydrogenase OS Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN serA PE 3 SV 1
blastp_uniprot_sprot sp|P73821|SERA_SYNY3 62 601 + 540 Gaps:21 94.40 554 41.30 2e-117 D-3-phosphoglycerate dehydrogenase OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN serA PE 3 SV 1
blastp_uniprot_sprot sp|P35136|SERA_BACSU 62 593 + 532 Gaps:29 97.71 525 41.13 6e-113 D-3-phosphoglycerate dehydrogenase OS Bacillus subtilis (strain 168) GN serA PE 3 SV 3
blastp_uniprot_sprot sp|Q60HD7|SERA_MACFA 62 475 + 414 Gaps:11 75.98 533 43.21 4e-93 D-3-phosphoglycerate dehydrogenase OS Macaca fascicularis GN PHGDH PE 2 SV 4
blastp_uniprot_sprot sp|A5A6P1|SERA_PANTR 62 475 + 414 Gaps:11 75.98 533 42.96 7e-93 D-3-phosphoglycerate dehydrogenase OS Pan troglodytes GN PHGDH PE 2 SV 1
blastp_uniprot_sprot sp|O08651|SERA_RAT 62 462 + 401 Gaps:6 74.48 533 43.58 8e-93 D-3-phosphoglycerate dehydrogenase OS Rattus norvegicus GN Phgdh PE 1 SV 3
blastp_uniprot_sprot sp|O43175|SERA_HUMAN 62 475 + 414 Gaps:11 75.98 533 42.96 8e-93 D-3-phosphoglycerate dehydrogenase OS Homo sapiens GN PHGDH PE 1 SV 4

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 529 601 73 PS51671 none ACT domain profile. IPR002912
Gene3D 58 163 106 G3DSA:3.40.50.720 none none IPR016040
Gene3D 522 595 74 G3DSA:3.30.70.260 none none none
SUPERFAMILY 519 596 78 SSF55021 none none none
ProSitePatterns 201 228 28 PS00065 none D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. IPR029752
SUPERFAMILY 158 340 183 SSF51735 none none none
Gene3D 164 341 178 G3DSA:3.40.50.720 none none IPR016040
SUPERFAMILY 377 523 147 SSF143548 none none IPR029009
Pfam 164 339 176 PF02826 none D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IPR006140
Gene3D 376 521 146 G3DSA:3.30.1330.90 none none IPR029009
ProSitePatterns 278 294 17 PS00671 none D-isomer specific 2-hydroxyacid dehydrogenases signature 3. IPR029753
TIGRFAM 62 599 538 TIGR01327 "KEGG:00260+1.1.1.95","KEGG:00680+1.1.1.95","UniPathway:UPA00135" PGDH: phosphoglycerate dehydrogenase IPR006236
Pfam 62 371 310 PF00389 none D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IPR006139
SMART 189 343 155 SM00997 "KEGG:00270+3.3.1.1","MetaCyc:PWY-5041","UniPathway:UPA00314" S-adenosyl-L-homocysteine hydrolase, NAD binding domain IPR015878
PANTHER 30 427 398 PTHR10996:SF110 none none none
PANTHER 30 427 398 PTHR10996 none none none
SUPERFAMILY 59 192 134 SSF52283 none none none
Pfam 530 587 58 PF01842 none ACT domain IPR002912
ProSitePatterns 249 271 23 PS00670 none D-isomer specific 2-hydroxyacid dehydrogenases signature 2. IPR029753

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 49   Mitochondrion 2 0.013 0.899 NON-PLANT 49