Protein : Qrob_P0201770.2 Q. robur
Protein Identifier  ? Qrob_P0201770.2 Organism . Name  Quercus robur
Score  75.0 Score Type  egn
Protein Description  (M=4) K03141 - transcription initiation factor TFIIH subunit 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 837  
Kegg Orthology  K03141
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006289 nucleotide-excision repair A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0000439 core TFIIH complex The 7 subunit core of TFIIH that is a part of either the general transcription factor holo-TFIIH or the nucleotide-excision repair factor 3 complex. In S. cerevisiae/humans the complex is composed of: Ssl2/XPB, Tfb1/p62, Tfb2/p52, Ssl1/p44, Tfb4/p34, Tfb5/p8 and Rad3/XPD.

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103497008 1 836 + 836 Gaps:90 100.00 595 72.94 0.0 probable RNA polymerase II transcription factor B subunit 1-1
blastp_kegg lcl|vvi:100249755 3 836 + 834 Gaps:104 99.83 602 71.21 0.0 probable RNA polymerase II transcription factor B subunit 1-1-like
blastp_kegg lcl|tcc:TCM_041171 1 835 + 835 Gaps:157 99.85 646 64.34 0.0 BSD domain (BTF2-like transcription factors Synapse-associated proteins and DOS2-like proteins) isoform 2
blastp_kegg lcl|pmum:103318967 27 834 + 808 Gaps:83 99.65 578 72.57 0.0 probable RNA polymerase II transcription factor B subunit 1-1
blastp_kegg lcl|pxb:103933400 12 834 + 823 Gaps:98 96.37 606 71.06 0.0 probable RNA polymerase II transcription factor B subunit 1-1
blastp_kegg lcl|pxb:103946393 6 834 + 829 Gaps:97 97.83 600 70.53 0.0 probable RNA polymerase II transcription factor B subunit 1-3
blastp_kegg lcl|mdm:103441983 6 834 + 829 Gaps:111 96.96 626 67.22 0.0 probable RNA polymerase II transcription factor B subunit 1-3
blastp_kegg lcl|pper:PRUPE_ppa003591mg 1 834 + 834 Gaps:124 99.64 563 72.73 0.0 hypothetical protein
blastp_kegg lcl|cam:101509283 2 836 + 835 Gaps:100 99.66 586 66.27 0.0 probable RNA polymerase II transcription factor B subunit 1-1-like
blastp_kegg lcl|gmx:100811780 1 836 + 836 Gaps:100 100.00 587 65.42 0.0 probable RNA polymerase II transcription factor B subunit 1-3-like
blastp_uniprot_sprot sp|Q3ECP0|TFB1A_ARATH 1 836 + 836 Gaps:106 100.00 591 60.24 0.0 Probable RNA polymerase II transcription factor B subunit 1-1 OS Arabidopsis thaliana GN TFB1-1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M322|TFB1C_ARATH 8 827 + 820 Gaps:106 99.31 579 59.48 1e-180 Probable RNA polymerase II transcription factor B subunit 1-3 OS Arabidopsis thaliana GN TFB1-3 PE 2 SV 2
blastp_uniprot_sprot sp|P32780|TF2H1_HUMAN 110 788 + 679 Gaps:90 80.84 548 28.22 3e-23 General transcription factor IIH subunit 1 OS Homo sapiens GN GTF2H1 PE 1 SV 1
blastp_uniprot_sprot sp|Q55FP1|TF2H1_DICDI 139 346 + 208 Gaps:20 31.28 697 25.69 2e-18 General transcription factor IIH subunit 1 OS Dictyostelium discoideum GN gtf2h1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9DBA9|TF2H1_MOUSE 110 788 + 679 Gaps:26 41.68 547 32.89 1e-16 General transcription factor IIH subunit 1 OS Mus musculus GN Gtf2h1 PE 2 SV 2
blastp_uniprot_sprot sp|Q960E8|TF2H1_DROME 117 294 + 178 Gaps:35 32.31 585 34.39 7e-15 General transcription factor IIH subunit 1 OS Drosophila melanogaster GN Tfb1 PE 2 SV 1
rpsblast_kog gnl|CDD|37285 23 828 + 806 Gaps:153 95.99 548 32.32 2e-66 KOG2074 KOG2074 KOG2074 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH subunit TFB1 [Transcription Replication recombination and repair].

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 203 251 49 SSF140383 none none none
SUPERFAMILY 141 183 43 SSF140383 none none none
SMART 134 187 54 SM00751 none domain in transcription factors and synapse-associated proteins IPR005607
SMART 197 249 53 SM00751 none domain in transcription factors and synapse-associated proteins IPR005607
ProSiteProfiles 142 187 46 PS50858 none BSD domain profile. IPR005607
Pfam 213 252 40 PF03909 none BSD domain IPR005607
Pfam 142 183 42 PF03909 none BSD domain IPR005607
PANTHER 694 830 137 PTHR12856 none none IPR027079
PANTHER 21 451 431 PTHR12856 none none IPR027079
Gene3D 7 100 94 G3DSA:2.30.29.30 none none IPR011993
ProSiteProfiles 213 249 37 PS50858 none BSD domain profile. IPR005607
SUPERFAMILY 7 100 94 SSF50729 none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting